5-SMe-dU containing DNA octamer
type: datablock
alternative label: 3IKI
link to mmcif: 3IKI.cif.gz
link to pdbml: 3IKI.xml.gz
link to pdbml noatom: 3IKI-noatom.xml.gz
link to pdbml extatom: 3IKI-extatom.xml.gz
link to doi: doi:10.2210/pdb3IKI/pdb
datablock name: 3IKI-noatom
has atom sites category: atom sitesCategory
has atom type category: atom typeCategory
has audit author category: audit authorCategory
has audit conform category: audit conformCategory
has cell category: cellCategory
has chem comp category: chem compCategory
has chem comp atom category: chem comp atomCategory
has chem comp bond category: chem comp bondCategory
has citation category: citationCategory
has citation author category: citation authorCategory
has database 2 category: database 2Category
has database PDB matrix category: database PDB matrixCategory
has diffrn category: diffrnCategory
has diffrn detector category: diffrn detectorCategory
has diffrn radiation category: diffrn radiationCategory
has diffrn radiation wavelength category: diffrn radiation wavelengthCategory
has diffrn source category: diffrn sourceCategory
has entity category: entityCategory
has entity poly category: entity polyCategory
has entity poly seq category: entity poly seqCategory
has entry category: entryCategory
has exptl category: exptlCategory
has exptl crystal category: exptl crystalCategory
has exptl crystal grow category: exptl crystal growCategory
has ndb struct conf na category: ndb struct conf naCategory
has ndb struct na base pair category: ndb struct na base pairCategory
has ndb struct na base pair step category: ndb struct na base pair stepCategory
has pdbx audit revision category category: pdbx audit revision categoryCategory
has pdbx audit revision details category: pdbx audit revision detailsCategory
has pdbx audit revision group category: pdbx audit revision groupCategory
has pdbx audit revision history category: pdbx audit revision historyCategory
has pdbx audit revision item category: pdbx audit revision itemCategory
has pdbx database status category: pdbx database statusCategory
has pdbx entity nonpoly category: pdbx entity nonpolyCategory
has pdbx entity src syn category: pdbx entity src synCategory
has pdbx initial refinement model category: pdbx initial refinement modelCategory
has pdbx nonpoly scheme category: pdbx nonpoly schemeCategory
has pdbx poly seq scheme category: pdbx poly seq schemeCategory
has pdbx refine tls category: pdbx refine tlsCategory
has pdbx refine tls group category: pdbx refine tls groupCategory
has pdbx struct assembly category: pdbx struct assemblyCategory
has pdbx struct assembly gen category: pdbx struct assembly genCategory
has pdbx struct assembly prop category: pdbx struct assembly propCategory
has pdbx struct conn angle category: pdbx struct conn angleCategory
has pdbx struct mod residue category: pdbx struct mod residueCategory
has pdbx struct oper list category: pdbx struct oper listCategory
has pdbx validate rmsd angle category: pdbx validate rmsd angleCategory
has refine category: refineCategory
has refine analyze category: refine analyzeCategory
has refine hist category: refine histCategory
has refine ls restr category: refine ls restrCategory
has refine ls shell category: refine ls shellCategory
has reflns category: reflnsCategory
has reflns shell category: reflns shellCategory
has software category: softwareCategory
has struct category: structCategory
has struct asym category: struct asymCategory
has struct biol category: struct biolCategory
has struct conn category: struct connCategory
has struct conn type category: struct conn typeCategory
has struct keywords category: struct keywordsCategory
has struct ref category: struct refCategory
has struct ref seq category: struct ref seqCategory
has struct site category: struct siteCategory
has struct site gen category: struct site genCategory
has symmetry category: symmetryCategory

3IKI
type: atom sites
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
atom sites.entry id: 3IKI
atom sites.fract transf matrix11: 0.02332
atom sites.fract transf matrix12: 0
atom sites.fract transf matrix13: 0
atom sites.fract transf matrix21: 0
atom sites.fract transf matrix22: 0.02332
atom sites.fract transf matrix23: 0
atom sites.fract transf matrix31: 0
atom sites.fract transf matrix32: 0
atom sites.fract transf matrix33: 0.042217
atom sites.fract transf vector1: 0
atom sites.fract transf vector2: 0
atom sites.fract transf vector3: 0

3IKI
referenced by atom sites: 3IKI
referenced by cell: 3IKI
referenced by database PDB matrix: 3IKI
type: entry
of datablock: 5-SMe-dU containing DNA octamer
entry.id: 3IKI
referenced by exptl: 3IKI,X-RAY DIFFRACTION
referenced by refine: 3IKI,X-RAY DIFFRACTION
referenced by refine analyze: 3IKI,X-RAY DIFFRACTION
referenced by reflns: http://rdf.wwpdb.org/pdb/3IKI/reflns/1
referenced by struct: 3IKI
referenced by struct keywords: 3IKI
referenced by symmetry: 3IKI
referenced by pdbx database status: 3IKI
referenced by ndb struct conf na: 3IKI,internal loop
referenced by ndb struct conf na: 3IKI,a-form double helix

http://rdf.wwpdb.org/pdb/3IKI/atom_type/C
type: atom type
of datablock: 5-SMe-dU containing DNA octamer
atom type.symbol: C

MG
type: atom type
of datablock: 5-SMe-dU containing DNA octamer
atom type.symbol: MG

http://rdf.wwpdb.org/pdb/3IKI/atom_type/N
type: atom type
of datablock: 5-SMe-dU containing DNA octamer
atom type.symbol: N

http://rdf.wwpdb.org/pdb/3IKI/atom_type/O
type: atom type
of datablock: 5-SMe-dU containing DNA octamer
atom type.symbol: O

http://rdf.wwpdb.org/pdb/3IKI/atom_type/P
type: atom type
of datablock: 5-SMe-dU containing DNA octamer
atom type.symbol: P

http://rdf.wwpdb.org/pdb/3IKI/atom_type/S
type: atom type
of datablock: 5-SMe-dU containing DNA octamer
atom type.symbol: S

SE
type: atom type
of datablock: 5-SMe-dU containing DNA octamer
atom type.symbol: SE

http://rdf.wwpdb.org/pdb/3IKI/audit_author/1
type: audit author
of datablock: 5-SMe-dU containing DNA octamer
audit author.pdbx ordinal: 1
audit author.name: Sheng, J.

http://rdf.wwpdb.org/pdb/3IKI/audit_author/2
type: audit author
of datablock: 5-SMe-dU containing DNA octamer
audit author.pdbx ordinal: 2
audit author.name: Hassan, A.E.A.

http://rdf.wwpdb.org/pdb/3IKI/audit_author/3
type: audit author
of datablock: 5-SMe-dU containing DNA octamer
audit author.pdbx ordinal: 3
audit author.name: Zhang, W.

http://rdf.wwpdb.org/pdb/3IKI/audit_author/4
type: audit author
of datablock: 5-SMe-dU containing DNA octamer
audit author.pdbx ordinal: 4
audit author.name: Gan, J.

http://rdf.wwpdb.org/pdb/3IKI/audit_author/5
type: audit author
of datablock: 5-SMe-dU containing DNA octamer
audit author.pdbx ordinal: 5
audit author.name: Huang, Z.

mmcif pdbx.dic,5.378
type: audit conform
of datablock: 5-SMe-dU containing DNA octamer
audit conform.dict name: mmcif_pdbx.dic
audit conform.dict version: 5.378
audit conform.dict location: http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic

3IKI
type: cell
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
cell.entry id: 3IKI
cell.z PDB: 8
cell.angle alpha: 90
cell.angle beta: 90
cell.angle gamma: 90
cell.length a: 42.882
cell.length b: 42.882
cell.length c: 23.687

DA
type: chem comp
of datablock: 5-SMe-dU containing DNA octamer
chem comp.id: DA
chem comp.formula: C10 H14 N5 O6 P
chem comp.formula weight: 331.222
chem comp.mon nstd flag: y
chem comp.name: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
chem comp.type: DNA linking
link to chem comp: DA
referenced by chem comp atom: H2,DA
referenced by chem comp bond: N3,C4,DA
referenced by entity poly seq: 1,DA,7
referenced by chem comp atom: OP3,DA
referenced by chem comp atom: P,DA
referenced by chem comp atom: OP1,DA
referenced by chem comp atom: OP2,DA
referenced by chem comp atom: O5&#39;,DA
referenced by chem comp atom: C5&#39;,DA
referenced by chem comp atom: C4&#39;,DA
referenced by chem comp atom: O4&#39;,DA
referenced by chem comp atom: C3&#39;,DA
referenced by chem comp atom: O3&#39;,DA
referenced by chem comp atom: C2&#39;,DA
referenced by chem comp atom: C1&#39;,DA
referenced by chem comp atom: N9,DA
referenced by chem comp atom: C8,DA
referenced by chem comp atom: N7,DA
referenced by chem comp atom: C5,DA
referenced by chem comp atom: C6,DA
referenced by chem comp atom: N6,DA
referenced by chem comp atom: N1,DA
referenced by chem comp atom: C2,DA
referenced by chem comp atom: N3,DA
referenced by chem comp atom: C4,DA
referenced by chem comp atom: HOP3,DA
referenced by chem comp atom: HOP2,DA
referenced by chem comp atom: H5&#39;,DA
referenced by chem comp atom: H5&#39;&#39;,DA
referenced by chem comp atom: H4&#39;,DA
referenced by chem comp atom: H3&#39;,DA
referenced by chem comp atom: HO3&#39;,DA
referenced by chem comp atom: H2&#39;,DA
referenced by chem comp atom: H2&#39;&#39;,DA
referenced by chem comp atom: H1&#39;,DA
referenced by chem comp atom: H8,DA
referenced by chem comp atom: H61,DA
referenced by chem comp atom: H62,DA
referenced by chem comp bond: OP3,P,DA
referenced by chem comp bond: OP3,HOP3,DA
referenced by chem comp bond: P,OP1,DA
referenced by chem comp bond: P,OP2,DA
referenced by chem comp bond: P,O5&#39;,DA
referenced by chem comp bond: OP2,HOP2,DA
referenced by chem comp bond: O5&#39;,C5&#39;,DA
referenced by chem comp bond: C5&#39;,C4&#39;,DA
referenced by chem comp bond: C5&#39;,H5&#39;,DA
referenced by chem comp bond: C5&#39;,H5&#39;&#39;,DA
referenced by chem comp bond: C4&#39;,O4&#39;,DA
referenced by chem comp bond: C4&#39;,C3&#39;,DA
referenced by chem comp bond: C4&#39;,H4&#39;,DA
referenced by chem comp bond: O4&#39;,C1&#39;,DA
referenced by chem comp bond: C3&#39;,O3&#39;,DA
referenced by chem comp bond: C3&#39;,C2&#39;,DA
referenced by chem comp bond: C3&#39;,H3&#39;,DA
referenced by chem comp bond: O3&#39;,HO3&#39;,DA
referenced by chem comp bond: C2&#39;,C1&#39;,DA
referenced by chem comp bond: C2&#39;,H2&#39;,DA
referenced by chem comp bond: C2&#39;,H2&#39;&#39;,DA
referenced by chem comp bond: C1&#39;,N9,DA
referenced by chem comp bond: C1&#39;,H1&#39;,DA
referenced by chem comp bond: N9,C8,DA
referenced by chem comp bond: N9,C4,DA
referenced by chem comp bond: C8,N7,DA
referenced by chem comp bond: C8,H8,DA
referenced by chem comp bond: N7,C5,DA
referenced by chem comp bond: C5,C6,DA
referenced by chem comp bond: C5,C4,DA
referenced by chem comp bond: C6,N6,DA
referenced by chem comp bond: C6,N1,DA
referenced by chem comp bond: N6,H61,DA

DC
type: chem comp
of datablock: 5-SMe-dU containing DNA octamer
chem comp.id: DC
chem comp.formula: C9 H14 N3 O7 P
chem comp.formula weight: 307.197
chem comp.mon nstd flag: y
chem comp.name: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
chem comp.type: DNA linking
link to chem comp: DC
referenced by chem comp atom: H6,DC
referenced by chem comp bond: C6,H6,DC
referenced by entity poly seq: 1,DC,8
referenced by chem comp atom: OP3,DC
referenced by chem comp atom: P,DC
referenced by chem comp atom: OP1,DC
referenced by chem comp atom: OP2,DC
referenced by chem comp atom: O5&#39;,DC
referenced by chem comp atom: C5&#39;,DC
referenced by chem comp atom: C4&#39;,DC
referenced by chem comp atom: O4&#39;,DC
referenced by chem comp atom: C3&#39;,DC
referenced by chem comp atom: O3&#39;,DC
referenced by chem comp atom: C2&#39;,DC
referenced by chem comp atom: C1&#39;,DC
referenced by chem comp atom: N1,DC
referenced by chem comp atom: C2,DC
referenced by chem comp atom: O2,DC
referenced by chem comp atom: N3,DC
referenced by chem comp atom: C4,DC
referenced by chem comp atom: N4,DC
referenced by chem comp atom: C5,DC
referenced by chem comp atom: C6,DC
referenced by chem comp atom: HOP3,DC
referenced by chem comp atom: HOP2,DC
referenced by chem comp atom: H5&#39;,DC
referenced by chem comp atom: H5&#39;&#39;,DC
referenced by chem comp atom: H4&#39;,DC
referenced by chem comp atom: H3&#39;,DC
referenced by chem comp atom: HO3&#39;,DC
referenced by chem comp atom: H2&#39;,DC
referenced by chem comp atom: H2&#39;&#39;,DC
referenced by chem comp atom: H1&#39;,DC
referenced by chem comp atom: H41,DC
referenced by chem comp atom: H42,DC
referenced by chem comp atom: H5,DC
referenced by chem comp bond: OP3,P,DC
referenced by chem comp bond: OP3,HOP3,DC
referenced by chem comp bond: P,OP1,DC
referenced by chem comp bond: P,OP2,DC
referenced by chem comp bond: P,O5&#39;,DC
referenced by chem comp bond: OP2,HOP2,DC
referenced by chem comp bond: O5&#39;,C5&#39;,DC
referenced by chem comp bond: C5&#39;,C4&#39;,DC
referenced by chem comp bond: C5&#39;,H5&#39;,DC
referenced by chem comp bond: C5&#39;,H5&#39;&#39;,DC
referenced by chem comp bond: C4&#39;,O4&#39;,DC
referenced by chem comp bond: C4&#39;,C3&#39;,DC
referenced by chem comp bond: C4&#39;,H4&#39;,DC
referenced by chem comp bond: O4&#39;,C1&#39;,DC
referenced by chem comp bond: C3&#39;,O3&#39;,DC
referenced by chem comp bond: C3&#39;,C2&#39;,DC
referenced by chem comp bond: C3&#39;,H3&#39;,DC
referenced by chem comp bond: O3&#39;,HO3&#39;,DC
referenced by chem comp bond: C2&#39;,C1&#39;,DC
referenced by chem comp bond: C2&#39;,H2&#39;,DC
referenced by chem comp bond: C2&#39;,H2&#39;&#39;,DC
referenced by chem comp bond: C1&#39;,N1,DC
referenced by chem comp bond: C1&#39;,H1&#39;,DC
referenced by chem comp bond: N1,C2,DC
referenced by chem comp bond: N1,C6,DC
referenced by chem comp bond: C2,O2,DC
referenced by chem comp bond: C2,N3,DC
referenced by chem comp bond: N3,C4,DC
referenced by chem comp bond: C4,N4,DC
referenced by chem comp bond: C4,C5,DC
referenced by chem comp bond: N4,H41,DC
referenced by chem comp bond: N4,H42,DC
referenced by chem comp bond: C5,C6,DC
referenced by chem comp bond: C5,H5,DC
referenced by entity poly seq: 1,DC,6

DG
type: chem comp
of datablock: 5-SMe-dU containing DNA octamer
chem comp.id: DG
chem comp.formula: C10 H14 N5 O7 P
chem comp.formula weight: 347.221
chem comp.mon nstd flag: y
chem comp.name: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
chem comp.type: DNA linking
link to chem comp: DG
referenced by chem comp atom: H22,DG
referenced by chem comp bond: N3,C4,DG
referenced by entity poly seq: 1,DG,3
referenced by chem comp atom: OP3,DG
referenced by chem comp atom: P,DG
referenced by chem comp atom: OP1,DG
referenced by chem comp atom: OP2,DG
referenced by chem comp atom: O5&#39;,DG
referenced by chem comp atom: C5&#39;,DG
referenced by chem comp atom: C4&#39;,DG
referenced by chem comp atom: O4&#39;,DG
referenced by chem comp atom: C3&#39;,DG
referenced by chem comp atom: O3&#39;,DG
referenced by chem comp atom: C2&#39;,DG
referenced by chem comp atom: C1&#39;,DG
referenced by chem comp atom: N9,DG
referenced by chem comp atom: C8,DG
referenced by chem comp atom: N7,DG
referenced by chem comp atom: C5,DG
referenced by chem comp atom: C6,DG
referenced by chem comp atom: O6,DG
referenced by chem comp atom: N1,DG
referenced by chem comp atom: C2,DG
referenced by chem comp atom: N2,DG
referenced by chem comp atom: N3,DG
referenced by chem comp atom: C4,DG
referenced by chem comp atom: HOP3,DG
referenced by chem comp atom: HOP2,DG
referenced by chem comp atom: H5&#39;,DG
referenced by chem comp atom: H5&#39;&#39;,DG
referenced by chem comp atom: H4&#39;,DG
referenced by chem comp atom: H3&#39;,DG
referenced by chem comp atom: HO3&#39;,DG
referenced by chem comp atom: H2&#39;,DG
referenced by chem comp atom: H2&#39;&#39;,DG
referenced by chem comp atom: H1&#39;,DG
referenced by chem comp atom: H8,DG
referenced by chem comp atom: H1,DG
referenced by chem comp atom: H21,DG
referenced by chem comp bond: OP3,P,DG
referenced by chem comp bond: OP3,HOP3,DG
referenced by chem comp bond: P,OP1,DG
referenced by chem comp bond: P,OP2,DG
referenced by chem comp bond: P,O5&#39;,DG
referenced by chem comp bond: OP2,HOP2,DG
referenced by chem comp bond: O5&#39;,C5&#39;,DG
referenced by chem comp bond: C5&#39;,C4&#39;,DG
referenced by chem comp bond: C5&#39;,H5&#39;,DG
referenced by chem comp bond: C5&#39;,H5&#39;&#39;,DG
referenced by chem comp bond: C4&#39;,O4&#39;,DG
referenced by chem comp bond: C4&#39;,C3&#39;,DG
referenced by chem comp bond: C4&#39;,H4&#39;,DG
referenced by chem comp bond: O4&#39;,C1&#39;,DG
referenced by chem comp bond: C3&#39;,O3&#39;,DG
referenced by chem comp bond: C3&#39;,C2&#39;,DG
referenced by chem comp bond: C3&#39;,H3&#39;,DG
referenced by chem comp bond: O3&#39;,HO3&#39;,DG
referenced by chem comp bond: C2&#39;,C1&#39;,DG
referenced by chem comp bond: C2&#39;,H2&#39;,DG
referenced by chem comp bond: C2&#39;,H2&#39;&#39;,DG
referenced by chem comp bond: C1&#39;,N9,DG
referenced by chem comp bond: C1&#39;,H1&#39;,DG
referenced by chem comp bond: N9,C8,DG
referenced by chem comp bond: N9,C4,DG
referenced by chem comp bond: C8,N7,DG
referenced by chem comp bond: C8,H8,DG
referenced by chem comp bond: N7,C5,DG
referenced by chem comp bond: C5,C6,DG
referenced by chem comp bond: C5,C4,DG
referenced by chem comp bond: C6,O6,DG
referenced by chem comp bond: C6,N1,DG

HOH
type: chem comp
of datablock: 5-SMe-dU containing DNA octamer
chem comp.id: HOH
chem comp.formula: H2 O
chem comp.formula weight: 18.015
chem comp.name: WATER
chem comp.type: non-polymer
link to chem comp: HOH
referenced by chem comp atom: H2,HOH
referenced by chem comp bond: O,H2,HOH
referenced by chem comp atom: O,HOH
referenced by chem comp atom: H1,HOH
referenced by chem comp bond: O,H1,HOH

MG
type: chem comp
of datablock: 5-SMe-dU containing DNA octamer
chem comp.id: MG
chem comp.formula: Mg 2
chem comp.formula weight: 24.305
chem comp.name: MAGNESIUM ION
chem comp.type: non-polymer
link to chem comp: MG
referenced by chem comp atom: MG,MG

UMS
type: chem comp
of datablock: 5-SMe-dU containing DNA octamer
chem comp.id: UMS
chem comp.formula: C10 H15 N2 O8 P Se
chem comp.formula weight: 401.168
chem comp.mon nstd flag: n
chem comp.name: 2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE
chem comp.type: DNA linking
link to chem comp: UMS
referenced by chem comp atom: H6,UMS
referenced by chem comp bond: C6,H6,UMS
referenced by entity poly seq: 1,UMS,2
referenced by chem comp atom: OP3,UMS
referenced by chem comp atom: P,UMS
referenced by chem comp atom: OP1,UMS
referenced by chem comp atom: OP2,UMS
referenced by chem comp atom: O5&#39;,UMS
referenced by chem comp atom: C5&#39;,UMS
referenced by chem comp atom: C4&#39;,UMS
referenced by chem comp atom: O4&#39;,UMS
referenced by chem comp atom: C3&#39;,UMS
referenced by chem comp atom: O3&#39;,UMS
referenced by chem comp atom: C2&#39;,UMS
referenced by chem comp atom: SE2&#39;,UMS
referenced by chem comp atom: C1&#39;,UMS
referenced by chem comp atom: CA&#39;,UMS
referenced by chem comp atom: N1,UMS
referenced by chem comp atom: C2,UMS
referenced by chem comp atom: O2,UMS
referenced by chem comp atom: N3,UMS
referenced by chem comp atom: C4,UMS
referenced by chem comp atom: O4,UMS
referenced by chem comp atom: C5,UMS
referenced by chem comp atom: C6,UMS
referenced by chem comp atom: HOP3,UMS
referenced by chem comp atom: HOP2,UMS
referenced by chem comp atom: H5&#39;,UMS
referenced by chem comp atom: H5&#39;2,UMS
referenced by chem comp atom: H4&#39;,UMS
referenced by chem comp atom: H3&#39;,UMS
referenced by chem comp atom: HO3&#39;,UMS
referenced by chem comp atom: H2&#39;,UMS
referenced by chem comp atom: H1&#39;,UMS
referenced by chem comp atom: HA&#39;,UMS
referenced by chem comp atom: HA&#39;2,UMS
referenced by chem comp atom: HA&#39;3,UMS
referenced by chem comp atom: H3,UMS
referenced by chem comp atom: H5,UMS
referenced by chem comp bond: OP3,P,UMS
referenced by chem comp bond: OP3,HOP3,UMS
referenced by chem comp bond: P,OP1,UMS
referenced by chem comp bond: P,OP2,UMS
referenced by chem comp bond: P,O5&#39;,UMS
referenced by chem comp bond: OP2,HOP2,UMS
referenced by chem comp bond: O5&#39;,C5&#39;,UMS
referenced by chem comp bond: C5&#39;,C4&#39;,UMS
referenced by chem comp bond: C5&#39;,H5&#39;,UMS
referenced by chem comp bond: C5&#39;,H5&#39;2,UMS
referenced by chem comp bond: C4&#39;,O4&#39;,UMS
referenced by chem comp bond: C4&#39;,C3&#39;,UMS
referenced by chem comp bond: C4&#39;,H4&#39;,UMS
referenced by chem comp bond: O4&#39;,C1&#39;,UMS
referenced by chem comp bond: C3&#39;,O3&#39;,UMS
referenced by chem comp bond: C3&#39;,C2&#39;,UMS
referenced by chem comp bond: C3&#39;,H3&#39;,UMS
referenced by chem comp bond: O3&#39;,HO3&#39;,UMS
referenced by chem comp bond: C2&#39;,SE2&#39;,UMS
referenced by chem comp bond: C2&#39;,C1&#39;,UMS
referenced by chem comp bond: C2&#39;,H2&#39;,UMS
referenced by chem comp bond: SE2&#39;,CA&#39;,UMS
referenced by chem comp bond: C1&#39;,N1,UMS
referenced by chem comp bond: C1&#39;,H1&#39;,UMS
referenced by chem comp bond: CA&#39;,HA&#39;,UMS
referenced by chem comp bond: CA&#39;,HA&#39;2,UMS
referenced by chem comp bond: CA&#39;,HA&#39;3,UMS
referenced by chem comp bond: N1,C2,UMS
referenced by chem comp bond: N1,C6,UMS
referenced by chem comp bond: C2,O2,UMS
referenced by chem comp bond: C2,N3,UMS
referenced by chem comp bond: N3,C4,UMS

US2
type: chem comp
of datablock: 5-SMe-dU containing DNA octamer
chem comp.id: US2
chem comp.formula: C10 H15 N2 O8 P S
chem comp.formula weight: 354.273
chem comp.mon nstd flag: n
chem comp.name: 2'-deoxy-5-(methylsulfanyl)uridine 5'-(dihydrogen phosphate)
chem comp.pdbx synonyms: 5-SMe-deoxyuridine-5'-phosphate
chem comp.type: DNA linking
link to chem comp: US2
referenced by chem comp atom: HO3P,US2
referenced by chem comp bond: O3P,HO3P,US2
referenced by entity poly seq: 1,US2,4
referenced by chem comp atom: P,US2
referenced by chem comp atom: N1,US2
referenced by chem comp atom: C6,US2
referenced by chem comp atom: C2,US2
referenced by chem comp atom: O2,US2
referenced by chem comp atom: N3,US2
referenced by chem comp atom: C4,US2
referenced by chem comp atom: O4,US2
referenced by chem comp atom: C5,US2
referenced by chem comp atom: S5,US2
referenced by chem comp atom: C5A,US2
referenced by chem comp atom: C1&#39;,US2
referenced by chem comp atom: O4&#39;,US2
referenced by chem comp atom: C4&#39;,US2
referenced by chem comp atom: C3&#39;,US2
referenced by chem comp atom: O3&#39;,US2
referenced by chem comp atom: C2&#39;,US2
referenced by chem comp atom: C5&#39;,US2
referenced by chem comp atom: O5&#39;,US2
referenced by chem comp atom: O1P,US2
referenced by chem comp atom: O2P,US2
referenced by chem comp atom: H6,US2
referenced by chem comp atom: HN3,US2
referenced by chem comp atom: H15A,US2
referenced by chem comp atom: H25A,US2
referenced by chem comp atom: H35A,US2
referenced by chem comp atom: H1&#39;,US2
referenced by chem comp atom: H4&#39;,US2
referenced by chem comp atom: H3&#39;,US2
referenced by chem comp atom: HO3&#39;,US2
referenced by chem comp atom: H12&#39;,US2
referenced by chem comp atom: H22&#39;,US2
referenced by chem comp atom: H15&#39;,US2
referenced by chem comp atom: H25&#39;,US2
referenced by chem comp atom: O3P,US2
referenced by chem comp atom: HO2P,US2
referenced by chem comp bond: P,O2P,US2
referenced by chem comp bond: N1,C6,US2
referenced by chem comp bond: N1,C1&#39;,US2
referenced by chem comp bond: C6,H6,US2
referenced by chem comp bond: C2,N1,US2
referenced by chem comp bond: O2,C2,US2
referenced by chem comp bond: N3,C4,US2
referenced by chem comp bond: N3,C2,US2
referenced by chem comp bond: N3,HN3,US2
referenced by chem comp bond: C4,C5,US2
referenced by chem comp bond: O4,C4,US2
referenced by chem comp bond: C5,S5,US2
referenced by chem comp bond: C5,C6,US2
referenced by chem comp bond: S5,C5A,US2
referenced by chem comp bond: C5A,H15A,US2
referenced by chem comp bond: C5A,H25A,US2
referenced by chem comp bond: C5A,H35A,US2
referenced by chem comp bond: C1&#39;,O4&#39;,US2
referenced by chem comp bond: C1&#39;,C2&#39;,US2
referenced by chem comp bond: C1&#39;,H1&#39;,US2
referenced by chem comp bond: O4&#39;,C4&#39;,US2
referenced by chem comp bond: C4&#39;,C3&#39;,US2
referenced by chem comp bond: C4&#39;,C5&#39;,US2
referenced by chem comp bond: C4&#39;,H4&#39;,US2
referenced by chem comp bond: C3&#39;,O3&#39;,US2
referenced by chem comp bond: C3&#39;,H3&#39;,US2
referenced by chem comp bond: O3&#39;,HO3&#39;,US2
referenced by chem comp bond: C2&#39;,C3&#39;,US2
referenced by chem comp bond: C2&#39;,H12&#39;,US2
referenced by chem comp bond: C2&#39;,H22&#39;,US2
referenced by chem comp bond: C5&#39;,H15&#39;,US2

OP3,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: OP3
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 1
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: OP3,HOP3,DA
referenced by chem comp bond: OP3,P,DA

P,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: P
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 2
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: P
referenced by chem comp bond: P,O5&#39;,DA
referenced by chem comp bond: OP3,P,DA
referenced by chem comp bond: P,OP1,DA
referenced by chem comp bond: P,OP2,DA

OP1,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: OP1
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 3
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: P,OP1,DA

OP2,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: OP2
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 4
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: OP2,HOP2,DA
referenced by chem comp bond: P,OP2,DA

O5&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: O5'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 5
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O5&#39;,C5&#39;,DA
referenced by chem comp bond: P,O5&#39;,DA

C5&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C5'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 6
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5&#39;,H5&#39;&#39;,DA
referenced by chem comp bond: O5&#39;,C5&#39;,DA
referenced by chem comp bond: C5&#39;,C4&#39;,DA
referenced by chem comp bond: C5&#39;,H5&#39;,DA

C4&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C4'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 7
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C4&#39;,H4&#39;,DA
referenced by chem comp bond: C5&#39;,C4&#39;,DA
referenced by chem comp bond: C4&#39;,O4&#39;,DA
referenced by chem comp bond: C4&#39;,C3&#39;,DA

O4&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: O4'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 8
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O4&#39;,C1&#39;,DA
referenced by chem comp bond: C4&#39;,O4&#39;,DA

C3&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C3'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 9
chem comp atom.pdbx stereo config: S
chem comp atom.type symbol: C
referenced by chem comp bond: C3&#39;,H3&#39;,DA
referenced by chem comp bond: C4&#39;,C3&#39;,DA
referenced by chem comp bond: C3&#39;,O3&#39;,DA
referenced by chem comp bond: C3&#39;,C2&#39;,DA

O3&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: O3'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 10
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O3&#39;,HO3&#39;,DA
referenced by chem comp bond: C3&#39;,O3&#39;,DA

C2&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C2'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 11
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C2&#39;,H2&#39;&#39;,DA
referenced by chem comp bond: C3&#39;,C2&#39;,DA
referenced by chem comp bond: C2&#39;,C1&#39;,DA
referenced by chem comp bond: C2&#39;,H2&#39;,DA

C1&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C1'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 12
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C1&#39;,H1&#39;,DA
referenced by chem comp bond: C2&#39;,C1&#39;,DA
referenced by chem comp bond: O4&#39;,C1&#39;,DA
referenced by chem comp bond: C1&#39;,N9,DA

N9,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: N9
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 13
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N9,C4,DA
referenced by chem comp bond: C1&#39;,N9,DA
referenced by chem comp bond: N9,C8,DA

C8,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C8
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 14
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C8,H8,DA
referenced by chem comp bond: N9,C8,DA
referenced by chem comp bond: C8,N7,DA

N7,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: N7
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 15
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N7,C5,DA
referenced by chem comp bond: C8,N7,DA

C5,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C5
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 16
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5,C4,DA
referenced by chem comp bond: N7,C5,DA
referenced by chem comp bond: C5,C6,DA

C6,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C6
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 17
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C6,N1,DA
referenced by chem comp bond: C5,C6,DA
referenced by chem comp bond: C6,N6,DA

N6,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: N6
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 18
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N6,H62,DA
referenced by chem comp bond: C6,N6,DA
referenced by chem comp bond: N6,H61,DA

N1,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: N1
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 19
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N1,C2,DA
referenced by chem comp bond: C6,N1,DA

C2,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C2
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 20
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C2,H2,DA
referenced by chem comp bond: N1,C2,DA
referenced by chem comp bond: C2,N3,DA

N3,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: N3
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 21
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N3,C4,DA
referenced by chem comp bond: C2,N3,DA

C4,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: C4
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 22
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: N3,C4,DA
referenced by chem comp bond: N9,C4,DA
referenced by chem comp bond: C5,C4,DA

HOP3,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: HOP3
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 23
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: OP3,HOP3,DA

HOP2,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: HOP2
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 24
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: OP2,HOP2,DA

H5&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H5'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 25
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H5&#39;,DA

H5&#39;&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H5''
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 26
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H5&#39;&#39;,DA

H4&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H4'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 27
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C4&#39;,H4&#39;,DA

H3&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H3'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 28
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C3&#39;,H3&#39;,DA

HO3&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: HO3'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 29
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: O3&#39;,HO3&#39;,DA

H2&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H2'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 30
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2&#39;,H2&#39;,DA

H2&#39;&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H2''
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 31
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2&#39;,H2&#39;&#39;,DA

H1&#39;,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H1'
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 32
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C1&#39;,H1&#39;,DA

H8,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H8
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 33
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C8,H8,DA

H61,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H61
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 34
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: N6,H61,DA

H62,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H62
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 35
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: N6,H62,DA

H2,DA
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
chem comp atom.atom id: H2
chem comp atom.comp id: DA
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 36
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2,H2,DA

OP3,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: OP3
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 37
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: OP3,HOP3,DC
referenced by chem comp bond: OP3,P,DC

P,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: P
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 38
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: P
referenced by chem comp bond: P,O5&#39;,DC
referenced by chem comp bond: OP3,P,DC
referenced by chem comp bond: P,OP1,DC
referenced by chem comp bond: P,OP2,DC

OP1,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: OP1
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 39
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: P,OP1,DC

OP2,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: OP2
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 40
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: OP2,HOP2,DC
referenced by chem comp bond: P,OP2,DC

O5&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: O5'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 41
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O5&#39;,C5&#39;,DC
referenced by chem comp bond: P,O5&#39;,DC

C5&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: C5'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 42
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5&#39;,H5&#39;&#39;,DC
referenced by chem comp bond: O5&#39;,C5&#39;,DC
referenced by chem comp bond: C5&#39;,C4&#39;,DC
referenced by chem comp bond: C5&#39;,H5&#39;,DC

C4&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: C4'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 43
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C4&#39;,H4&#39;,DC
referenced by chem comp bond: C5&#39;,C4&#39;,DC
referenced by chem comp bond: C4&#39;,O4&#39;,DC
referenced by chem comp bond: C4&#39;,C3&#39;,DC

O4&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: O4'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 44
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O4&#39;,C1&#39;,DC
referenced by chem comp bond: C4&#39;,O4&#39;,DC

C3&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: C3'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 45
chem comp atom.pdbx stereo config: S
chem comp atom.type symbol: C
referenced by chem comp bond: C3&#39;,H3&#39;,DC
referenced by chem comp bond: C4&#39;,C3&#39;,DC
referenced by chem comp bond: C3&#39;,O3&#39;,DC
referenced by chem comp bond: C3&#39;,C2&#39;,DC

O3&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: O3'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 46
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O3&#39;,HO3&#39;,DC
referenced by chem comp bond: C3&#39;,O3&#39;,DC

C2&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: C2'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 47
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C2&#39;,H2&#39;&#39;,DC
referenced by chem comp bond: C3&#39;,C2&#39;,DC
referenced by chem comp bond: C2&#39;,C1&#39;,DC
referenced by chem comp bond: C2&#39;,H2&#39;,DC

C1&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: C1'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 48
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C1&#39;,H1&#39;,DC
referenced by chem comp bond: C2&#39;,C1&#39;,DC
referenced by chem comp bond: O4&#39;,C1&#39;,DC
referenced by chem comp bond: C1&#39;,N1,DC

N1,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: N1
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 49
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N1,C6,DC
referenced by chem comp bond: C1&#39;,N1,DC
referenced by chem comp bond: N1,C2,DC

C2,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: C2
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 50
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C2,N3,DC
referenced by chem comp bond: N1,C2,DC
referenced by chem comp bond: C2,O2,DC

O2,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: O2
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 51
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: C2,O2,DC

N3,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: N3
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 52
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N3,C4,DC
referenced by chem comp bond: C2,N3,DC

C4,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: C4
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 53
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C4,C5,DC
referenced by chem comp bond: N3,C4,DC
referenced by chem comp bond: C4,N4,DC

N4,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: N4
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 54
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N4,H42,DC
referenced by chem comp bond: C4,N4,DC
referenced by chem comp bond: N4,H41,DC

C5,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: C5
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 55
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5,H5,DC
referenced by chem comp bond: C4,C5,DC
referenced by chem comp bond: C5,C6,DC

C6,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: C6
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 56
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C6,H6,DC
referenced by chem comp bond: C5,C6,DC
referenced by chem comp bond: N1,C6,DC

HOP3,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: HOP3
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 57
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: OP3,HOP3,DC

HOP2,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: HOP2
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 58
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: OP2,HOP2,DC

H5&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H5'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 59
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H5&#39;,DC

H5&#39;&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H5''
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 60
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H5&#39;&#39;,DC

H4&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H4'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 61
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C4&#39;,H4&#39;,DC

H3&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H3'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 62
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C3&#39;,H3&#39;,DC

HO3&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: HO3'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 63
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: O3&#39;,HO3&#39;,DC

H2&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H2'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 64
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2&#39;,H2&#39;,DC

H2&#39;&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H2''
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 65
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2&#39;,H2&#39;&#39;,DC

H1&#39;,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H1'
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 66
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C1&#39;,H1&#39;,DC

H41,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H41
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 67
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: N4,H41,DC

H42,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H42
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 68
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: N4,H42,DC

H5,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H5
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 69
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5,H5,DC

H6,DC
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
chem comp atom.atom id: H6
chem comp atom.comp id: DC
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 70
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C6,H6,DC

OP3,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: OP3
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 71
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: OP3,HOP3,DG
referenced by chem comp bond: OP3,P,DG

P,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: P
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 72
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: P
referenced by chem comp bond: P,O5&#39;,DG
referenced by chem comp bond: OP3,P,DG
referenced by chem comp bond: P,OP1,DG
referenced by chem comp bond: P,OP2,DG

OP1,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: OP1
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 73
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: P,OP1,DG

OP2,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: OP2
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 74
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: OP2,HOP2,DG
referenced by chem comp bond: P,OP2,DG

O5&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: O5'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 75
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O5&#39;,C5&#39;,DG
referenced by chem comp bond: P,O5&#39;,DG

C5&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C5'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 76
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5&#39;,H5&#39;&#39;,DG
referenced by chem comp bond: O5&#39;,C5&#39;,DG
referenced by chem comp bond: C5&#39;,C4&#39;,DG
referenced by chem comp bond: C5&#39;,H5&#39;,DG

C4&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C4'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 77
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C4&#39;,H4&#39;,DG
referenced by chem comp bond: C5&#39;,C4&#39;,DG
referenced by chem comp bond: C4&#39;,O4&#39;,DG
referenced by chem comp bond: C4&#39;,C3&#39;,DG

O4&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: O4'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 78
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O4&#39;,C1&#39;,DG
referenced by chem comp bond: C4&#39;,O4&#39;,DG

C3&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C3'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 79
chem comp atom.pdbx stereo config: S
chem comp atom.type symbol: C
referenced by chem comp bond: C3&#39;,H3&#39;,DG
referenced by chem comp bond: C4&#39;,C3&#39;,DG
referenced by chem comp bond: C3&#39;,O3&#39;,DG
referenced by chem comp bond: C3&#39;,C2&#39;,DG

O3&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: O3'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 80
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O3&#39;,HO3&#39;,DG
referenced by chem comp bond: C3&#39;,O3&#39;,DG

C2&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C2'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 81
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C2&#39;,H2&#39;&#39;,DG
referenced by chem comp bond: C3&#39;,C2&#39;,DG
referenced by chem comp bond: C2&#39;,C1&#39;,DG
referenced by chem comp bond: C2&#39;,H2&#39;,DG

C1&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C1'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 82
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C1&#39;,H1&#39;,DG
referenced by chem comp bond: C2&#39;,C1&#39;,DG
referenced by chem comp bond: O4&#39;,C1&#39;,DG
referenced by chem comp bond: C1&#39;,N9,DG

N9,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: N9
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 83
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N9,C4,DG
referenced by chem comp bond: C1&#39;,N9,DG
referenced by chem comp bond: N9,C8,DG

C8,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C8
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 84
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C8,H8,DG
referenced by chem comp bond: N9,C8,DG
referenced by chem comp bond: C8,N7,DG

N7,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: N7
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 85
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N7,C5,DG
referenced by chem comp bond: C8,N7,DG

C5,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C5
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 86
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5,C4,DG
referenced by chem comp bond: N7,C5,DG
referenced by chem comp bond: C5,C6,DG

C6,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C6
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 87
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C6,N1,DG
referenced by chem comp bond: C5,C6,DG
referenced by chem comp bond: C6,O6,DG

O6,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: O6
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 88
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: C6,O6,DG

N1,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: N1
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 89
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N1,H1,DG
referenced by chem comp bond: C6,N1,DG
referenced by chem comp bond: N1,C2,DG

C2,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C2
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 90
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C2,N3,DG
referenced by chem comp bond: N1,C2,DG
referenced by chem comp bond: C2,N2,DG

N2,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: N2
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 91
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N2,H22,DG
referenced by chem comp bond: C2,N2,DG
referenced by chem comp bond: N2,H21,DG

N3,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: N3
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 92
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N3,C4,DG
referenced by chem comp bond: C2,N3,DG

C4,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: C4
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: Y
chem comp atom.pdbx ordinal: 93
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: N3,C4,DG
referenced by chem comp bond: N9,C4,DG
referenced by chem comp bond: C5,C4,DG

HOP3,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: HOP3
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 94
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: OP3,HOP3,DG

HOP2,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: HOP2
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 95
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: OP2,HOP2,DG

H5&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H5'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 96
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H5&#39;,DG

H5&#39;&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H5''
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 97
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H5&#39;&#39;,DG

H4&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H4'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 98
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C4&#39;,H4&#39;,DG

H3&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H3'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 99
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C3&#39;,H3&#39;,DG

HO3&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: HO3'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 100
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: O3&#39;,HO3&#39;,DG

H2&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H2'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 101
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2&#39;,H2&#39;,DG

H2&#39;&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H2''
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 102
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2&#39;,H2&#39;&#39;,DG

H1&#39;,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H1'
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 103
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C1&#39;,H1&#39;,DG

H8,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H8
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 104
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C8,H8,DG

H1,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H1
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 105
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: N1,H1,DG

H21,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H21
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 106
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: N2,H21,DG

H22,DG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
chem comp atom.atom id: H22
chem comp atom.comp id: DG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 107
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: N2,H22,DG

O,HOH
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: HOH
chem comp atom.atom id: O
chem comp atom.comp id: HOH
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 108
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O,H2,HOH
referenced by chem comp bond: O,H1,HOH

H1,HOH
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: HOH
chem comp atom.atom id: H1
chem comp atom.comp id: HOH
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 109
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: O,H1,HOH

H2,HOH
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: HOH
chem comp atom.atom id: H2
chem comp atom.comp id: HOH
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 110
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: O,H2,HOH

MG,MG
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: MG
chem comp atom.atom id: MG
chem comp atom.comp id: MG
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 111
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: MG

OP3,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: OP3
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 112
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: OP3,HOP3,UMS
referenced by chem comp bond: OP3,P,UMS

P,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: P
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 113
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: P
referenced by chem comp bond: P,O5&#39;,UMS
referenced by chem comp bond: OP3,P,UMS
referenced by chem comp bond: P,OP1,UMS
referenced by chem comp bond: P,OP2,UMS

OP1,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: OP1
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 114
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: P,OP1,UMS

OP2,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: OP2
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 115
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: OP2,HOP2,UMS
referenced by chem comp bond: P,OP2,UMS

O5&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: O5'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 116
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O5&#39;,C5&#39;,UMS
referenced by chem comp bond: P,O5&#39;,UMS

C5&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: C5'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 117
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5&#39;,H5&#39;2,UMS
referenced by chem comp bond: O5&#39;,C5&#39;,UMS
referenced by chem comp bond: C5&#39;,C4&#39;,UMS
referenced by chem comp bond: C5&#39;,H5&#39;,UMS

C4&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: C4'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 118
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C4&#39;,H4&#39;,UMS
referenced by chem comp bond: C5&#39;,C4&#39;,UMS
referenced by chem comp bond: C4&#39;,O4&#39;,UMS
referenced by chem comp bond: C4&#39;,C3&#39;,UMS

O4&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: O4'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 119
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O4&#39;,C1&#39;,UMS
referenced by chem comp bond: C4&#39;,O4&#39;,UMS

C3&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: C3'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 120
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C3&#39;,H3&#39;,UMS
referenced by chem comp bond: C4&#39;,C3&#39;,UMS
referenced by chem comp bond: C3&#39;,O3&#39;,UMS
referenced by chem comp bond: C3&#39;,C2&#39;,UMS

O3&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: O3'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 121
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O3&#39;,HO3&#39;,UMS
referenced by chem comp bond: C3&#39;,O3&#39;,UMS

C2&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: C2'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 122
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C2&#39;,H2&#39;,UMS
referenced by chem comp bond: C3&#39;,C2&#39;,UMS
referenced by chem comp bond: C2&#39;,SE2&#39;,UMS
referenced by chem comp bond: C2&#39;,C1&#39;,UMS

SE2&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: SE2'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 123
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: SE
referenced by chem comp bond: SE2&#39;,CA&#39;,UMS
referenced by chem comp bond: C2&#39;,SE2&#39;,UMS

C1&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: C1'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 124
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C1&#39;,H1&#39;,UMS
referenced by chem comp bond: C2&#39;,C1&#39;,UMS
referenced by chem comp bond: O4&#39;,C1&#39;,UMS
referenced by chem comp bond: C1&#39;,N1,UMS

CA&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: CA'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 125
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: CA&#39;,HA&#39;3,UMS
referenced by chem comp bond: SE2&#39;,CA&#39;,UMS
referenced by chem comp bond: CA&#39;,HA&#39;,UMS
referenced by chem comp bond: CA&#39;,HA&#39;2,UMS

N1,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: N1
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 126
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N1,C6,UMS
referenced by chem comp bond: C1&#39;,N1,UMS
referenced by chem comp bond: N1,C2,UMS

C2,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: C2
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 127
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C2,N3,UMS
referenced by chem comp bond: N1,C2,UMS
referenced by chem comp bond: C2,O2,UMS

O2,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: O2
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 128
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: C2,O2,UMS

N3,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: N3
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 129
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N3,H3,UMS
referenced by chem comp bond: C2,N3,UMS
referenced by chem comp bond: N3,C4,UMS

C4,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: C4
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 130
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C4,C5,UMS
referenced by chem comp bond: N3,C4,UMS
referenced by chem comp bond: C4,O4,UMS

O4,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: O4
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 131
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: C4,O4,UMS

C5,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: C5
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 132
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5,H5,UMS
referenced by chem comp bond: C4,C5,UMS
referenced by chem comp bond: C5,C6,UMS

C6,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: C6
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 133
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C6,H6,UMS
referenced by chem comp bond: C5,C6,UMS
referenced by chem comp bond: N1,C6,UMS

HOP3,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: HOP3
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 134
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: OP3,HOP3,UMS

HOP2,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: HOP2
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 135
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: OP2,HOP2,UMS

H5&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: H5'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 136
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H5&#39;,UMS

H5&#39;2,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: H5'2
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 137
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H5&#39;2,UMS

H4&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: H4'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 138
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C4&#39;,H4&#39;,UMS

H3&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: H3'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 139
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C3&#39;,H3&#39;,UMS

HO3&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: HO3'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 140
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: O3&#39;,HO3&#39;,UMS

H2&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: H2'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 141
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2&#39;,H2&#39;,UMS

H1&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: H1'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 142
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C1&#39;,H1&#39;,UMS

HA&#39;,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: HA'
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 143
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: CA&#39;,HA&#39;,UMS

HA&#39;2,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: HA'2
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 144
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: CA&#39;,HA&#39;2,UMS

HA&#39;3,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: HA'3
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 145
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: CA&#39;,HA&#39;3,UMS

H3,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: H3
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 146
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: N3,H3,UMS

H5,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: H5
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 147
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5,H5,UMS

H6,UMS
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
chem comp atom.atom id: H6
chem comp atom.comp id: UMS
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 148
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C6,H6,UMS

P,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: P
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 149
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: P
referenced by chem comp bond: P,O3P,US2
referenced by chem comp bond: O1P,P,US2
referenced by chem comp bond: P,O2P,US2
referenced by chem comp bond: O5&#39;,P,US2

N1,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: N1
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 150
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N1,C1&#39;,US2
referenced by chem comp bond: C2,N1,US2
referenced by chem comp bond: N1,C6,US2

C6,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C6
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 151
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C6,H6,US2
referenced by chem comp bond: C5,C6,US2
referenced by chem comp bond: N1,C6,US2

C2,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C2
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 152
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C2,N1,US2
referenced by chem comp bond: N3,C2,US2
referenced by chem comp bond: O2,C2,US2

O2,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: O2
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 153
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O2,C2,US2

N3,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: N3
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 154
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: N
referenced by chem comp bond: N3,HN3,US2
referenced by chem comp bond: N3,C4,US2
referenced by chem comp bond: N3,C2,US2

C4,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C4
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 155
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C4,C5,US2
referenced by chem comp bond: O4,C4,US2
referenced by chem comp bond: N3,C4,US2

O4,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: O4
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 156
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O4,C4,US2

C5,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C5
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 157
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5,C6,US2
referenced by chem comp bond: C4,C5,US2
referenced by chem comp bond: C5,S5,US2

S5,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: S5
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 158
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: S
referenced by chem comp bond: S5,C5A,US2
referenced by chem comp bond: C5,S5,US2

C5A,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C5A
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 159
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5A,H35A,US2
referenced by chem comp bond: S5,C5A,US2
referenced by chem comp bond: C5A,H15A,US2
referenced by chem comp bond: C5A,H25A,US2

C1&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C1'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 160
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C1&#39;,H1&#39;,US2
referenced by chem comp bond: N1,C1&#39;,US2
referenced by chem comp bond: C1&#39;,O4&#39;,US2
referenced by chem comp bond: C1&#39;,C2&#39;,US2

O4&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: O4'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 161
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O4&#39;,C4&#39;,US2
referenced by chem comp bond: C1&#39;,O4&#39;,US2

C4&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C4'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 162
chem comp atom.pdbx stereo config: R
chem comp atom.type symbol: C
referenced by chem comp bond: C4&#39;,H4&#39;,US2
referenced by chem comp bond: O4&#39;,C4&#39;,US2
referenced by chem comp bond: C4&#39;,C3&#39;,US2
referenced by chem comp bond: C4&#39;,C5&#39;,US2

C3&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C3'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 163
chem comp atom.pdbx stereo config: S
chem comp atom.type symbol: C
referenced by chem comp bond: C3&#39;,H3&#39;,US2
referenced by chem comp bond: C2&#39;,C3&#39;,US2
referenced by chem comp bond: C4&#39;,C3&#39;,US2
referenced by chem comp bond: C3&#39;,O3&#39;,US2

O3&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: O3'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 164
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O3&#39;,HO3&#39;,US2
referenced by chem comp bond: C3&#39;,O3&#39;,US2

C2&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C2'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 165
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C2&#39;,H22&#39;,US2
referenced by chem comp bond: C1&#39;,C2&#39;,US2
referenced by chem comp bond: C2&#39;,C3&#39;,US2
referenced by chem comp bond: C2&#39;,H12&#39;,US2

C5&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: C5'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 166
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: C
referenced by chem comp bond: C5&#39;,H25&#39;,US2
referenced by chem comp bond: O5&#39;,C5&#39;,US2
referenced by chem comp bond: C4&#39;,C5&#39;,US2
referenced by chem comp bond: C5&#39;,H15&#39;,US2

O5&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: O5'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 167
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O5&#39;,P,US2
referenced by chem comp bond: O5&#39;,C5&#39;,US2

O1P,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: O1P
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 168
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O1P,P,US2

O2P,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: O2P
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 169
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O2P,HO2P,US2
referenced by chem comp bond: P,O2P,US2

H6,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H6
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 170
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C6,H6,US2

HN3,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: HN3
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 171
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: N3,HN3,US2

H15A,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H15A
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 172
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5A,H15A,US2

H25A,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H25A
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 173
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5A,H25A,US2

H35A,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H35A
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 174
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5A,H35A,US2

H1&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H1'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 175
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C1&#39;,H1&#39;,US2

H4&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H4'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 176
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C4&#39;,H4&#39;,US2

H3&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H3'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 177
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C3&#39;,H3&#39;,US2

HO3&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: HO3'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 178
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: O3&#39;,HO3&#39;,US2

H12&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H12'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 179
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2&#39;,H12&#39;,US2

H22&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H22'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 180
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C2&#39;,H22&#39;,US2

H15&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H15'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 181
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H15&#39;,US2

H25&#39;,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: H25'
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 182
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: C5&#39;,H25&#39;,US2

O3P,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: O3P
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 183
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: O
referenced by chem comp bond: O3P,HO3P,US2
referenced by chem comp bond: P,O3P,US2

HO2P,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: HO2P
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 184
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: O2P,HO2P,US2

HO3P,US2
type: chem comp atom
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
chem comp atom.atom id: HO3P
chem comp atom.comp id: US2
chem comp atom.pdbx aromatic flag: N
chem comp atom.pdbx ordinal: 185
chem comp atom.pdbx stereo config: N
chem comp atom.type symbol: H
referenced by chem comp bond: O3P,HO3P,US2

OP3,P,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP3,DA
reference to chem comp atom: P,DA
reference to chem comp: DA
chem comp bond.atom id 1: OP3
chem comp bond.atom id 2: P
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 1
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP3,HOP3,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP3,DA
reference to chem comp atom: HOP3,DA
reference to chem comp: DA
chem comp bond.atom id 1: OP3
chem comp bond.atom id 2: HOP3
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 2
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

P,OP1,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,DA
reference to chem comp atom: OP1,DA
reference to chem comp: DA
chem comp bond.atom id 1: P
chem comp bond.atom id 2: OP1
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 3
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

P,OP2,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,DA
reference to chem comp atom: OP2,DA
reference to chem comp: DA
chem comp bond.atom id 1: P
chem comp bond.atom id 2: OP2
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 4
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

P,O5&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,DA
reference to chem comp atom: O5&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: P
chem comp bond.atom id 2: O5'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 5
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP2,HOP2,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP2,DA
reference to chem comp atom: HOP2,DA
reference to chem comp: DA
chem comp bond.atom id 1: OP2
chem comp bond.atom id 2: HOP2
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 6
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O5&#39;,C5&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O5&#39;,DA
reference to chem comp atom: C5&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: O5'
chem comp bond.atom id 2: C5'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 7
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,C4&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,DA
reference to chem comp atom: C4&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: C4'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 8
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H5&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,DA
reference to chem comp atom: H5&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H5'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 9
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H5&#39;&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,DA
reference to chem comp atom: H5&#39;&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H5''
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 10
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,O4&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,DA
reference to chem comp atom: O4&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: O4'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 11
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,C3&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,DA
reference to chem comp atom: C3&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: C3'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 12
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,H4&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,DA
reference to chem comp atom: H4&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: H4'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 13
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O4&#39;,C1&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O4&#39;,DA
reference to chem comp atom: C1&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: O4'
chem comp bond.atom id 2: C1'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 14
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,O3&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,DA
reference to chem comp atom: O3&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: O3'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 15
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,C2&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,DA
reference to chem comp atom: C2&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: C2'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 16
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,H3&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,DA
reference to chem comp atom: H3&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: H3'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 17
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O3&#39;,HO3&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O3&#39;,DA
reference to chem comp atom: HO3&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: O3'
chem comp bond.atom id 2: HO3'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 18
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,C1&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,DA
reference to chem comp atom: C1&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: C1'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 19
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,H2&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,DA
reference to chem comp atom: H2&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: H2'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 20
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,H2&#39;&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,DA
reference to chem comp atom: H2&#39;&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: H2''
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 21
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,N9,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,DA
reference to chem comp atom: N9,DA
reference to chem comp: DA
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: N9
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 22
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,H1&#39;,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,DA
reference to chem comp atom: H1&#39;,DA
reference to chem comp: DA
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: H1'
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 23
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N9,C8,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N9,DA
reference to chem comp atom: C8,DA
reference to chem comp: DA
chem comp bond.atom id 1: N9
chem comp bond.atom id 2: C8
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 24
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N9,C4,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N9,DA
reference to chem comp atom: C4,DA
reference to chem comp: DA
chem comp bond.atom id 1: N9
chem comp bond.atom id 2: C4
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 25
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C8,N7,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C8,DA
reference to chem comp atom: N7,DA
reference to chem comp: DA
chem comp bond.atom id 1: C8
chem comp bond.atom id 2: N7
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 26
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C8,H8,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C8,DA
reference to chem comp atom: H8,DA
reference to chem comp: DA
chem comp bond.atom id 1: C8
chem comp bond.atom id 2: H8
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 27
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N7,C5,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N7,DA
reference to chem comp atom: C5,DA
reference to chem comp: DA
chem comp bond.atom id 1: N7
chem comp bond.atom id 2: C5
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 28
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5,C6,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,DA
reference to chem comp atom: C6,DA
reference to chem comp: DA
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: C6
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 29
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5,C4,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,DA
reference to chem comp atom: C4,DA
reference to chem comp: DA
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: C4
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 30
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C6,N6,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C6,DA
reference to chem comp atom: N6,DA
reference to chem comp: DA
chem comp bond.atom id 1: C6
chem comp bond.atom id 2: N6
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 31
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C6,N1,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C6,DA
reference to chem comp atom: N1,DA
reference to chem comp: DA
chem comp bond.atom id 1: C6
chem comp bond.atom id 2: N1
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 32
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

N6,H61,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N6,DA
reference to chem comp atom: H61,DA
reference to chem comp: DA
chem comp bond.atom id 1: N6
chem comp bond.atom id 2: H61
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 33
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N6,H62,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N6,DA
reference to chem comp atom: H62,DA
reference to chem comp: DA
chem comp bond.atom id 1: N6
chem comp bond.atom id 2: H62
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 34
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N1,C2,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N1,DA
reference to chem comp atom: C2,DA
reference to chem comp: DA
chem comp bond.atom id 1: N1
chem comp bond.atom id 2: C2
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 35
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2,N3,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2,DA
reference to chem comp atom: N3,DA
reference to chem comp: DA
chem comp bond.atom id 1: C2
chem comp bond.atom id 2: N3
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 36
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C2,H2,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2,DA
reference to chem comp atom: H2,DA
reference to chem comp: DA
chem comp bond.atom id 1: C2
chem comp bond.atom id 2: H2
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 37
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N3,C4,DA
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N3,DA
reference to chem comp atom: C4,DA
reference to chem comp: DA
chem comp bond.atom id 1: N3
chem comp bond.atom id 2: C4
chem comp bond.comp id: DA
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 38
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP3,P,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP3,DC
reference to chem comp atom: P,DC
reference to chem comp: DC
chem comp bond.atom id 1: OP3
chem comp bond.atom id 2: P
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 39
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP3,HOP3,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP3,DC
reference to chem comp atom: HOP3,DC
reference to chem comp: DC
chem comp bond.atom id 1: OP3
chem comp bond.atom id 2: HOP3
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 40
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

P,OP1,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,DC
reference to chem comp atom: OP1,DC
reference to chem comp: DC
chem comp bond.atom id 1: P
chem comp bond.atom id 2: OP1
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 41
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

P,OP2,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,DC
reference to chem comp atom: OP2,DC
reference to chem comp: DC
chem comp bond.atom id 1: P
chem comp bond.atom id 2: OP2
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 42
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

P,O5&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,DC
reference to chem comp atom: O5&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: P
chem comp bond.atom id 2: O5'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 43
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP2,HOP2,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP2,DC
reference to chem comp atom: HOP2,DC
reference to chem comp: DC
chem comp bond.atom id 1: OP2
chem comp bond.atom id 2: HOP2
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 44
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O5&#39;,C5&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O5&#39;,DC
reference to chem comp atom: C5&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: O5'
chem comp bond.atom id 2: C5'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 45
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,C4&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,DC
reference to chem comp atom: C4&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: C4'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 46
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H5&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,DC
reference to chem comp atom: H5&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H5'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 47
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H5&#39;&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,DC
reference to chem comp atom: H5&#39;&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H5''
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 48
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,O4&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,DC
reference to chem comp atom: O4&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: O4'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 49
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,C3&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,DC
reference to chem comp atom: C3&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: C3'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 50
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,H4&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,DC
reference to chem comp atom: H4&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: H4'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 51
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O4&#39;,C1&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O4&#39;,DC
reference to chem comp atom: C1&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: O4'
chem comp bond.atom id 2: C1'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 52
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,O3&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,DC
reference to chem comp atom: O3&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: O3'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 53
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,C2&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,DC
reference to chem comp atom: C2&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: C2'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 54
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,H3&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,DC
reference to chem comp atom: H3&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: H3'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 55
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O3&#39;,HO3&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O3&#39;,DC
reference to chem comp atom: HO3&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: O3'
chem comp bond.atom id 2: HO3'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 56
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,C1&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,DC
reference to chem comp atom: C1&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: C1'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 57
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,H2&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,DC
reference to chem comp atom: H2&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: H2'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 58
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,H2&#39;&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,DC
reference to chem comp atom: H2&#39;&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: H2''
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 59
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,N1,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,DC
reference to chem comp atom: N1,DC
reference to chem comp: DC
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: N1
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 60
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,H1&#39;,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,DC
reference to chem comp atom: H1&#39;,DC
reference to chem comp: DC
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: H1'
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 61
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N1,C2,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N1,DC
reference to chem comp atom: C2,DC
reference to chem comp: DC
chem comp bond.atom id 1: N1
chem comp bond.atom id 2: C2
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 62
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N1,C6,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N1,DC
reference to chem comp atom: C6,DC
reference to chem comp: DC
chem comp bond.atom id 1: N1
chem comp bond.atom id 2: C6
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 63
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2,O2,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2,DC
reference to chem comp atom: O2,DC
reference to chem comp: DC
chem comp bond.atom id 1: C2
chem comp bond.atom id 2: O2
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 64
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C2,N3,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2,DC
reference to chem comp atom: N3,DC
reference to chem comp: DC
chem comp bond.atom id 1: C2
chem comp bond.atom id 2: N3
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 65
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N3,C4,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N3,DC
reference to chem comp atom: C4,DC
reference to chem comp: DC
chem comp bond.atom id 1: N3
chem comp bond.atom id 2: C4
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 66
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C4,N4,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4,DC
reference to chem comp atom: N4,DC
reference to chem comp: DC
chem comp bond.atom id 1: C4
chem comp bond.atom id 2: N4
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 67
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4,C5,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4,DC
reference to chem comp atom: C5,DC
reference to chem comp: DC
chem comp bond.atom id 1: C4
chem comp bond.atom id 2: C5
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 68
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N4,H41,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N4,DC
reference to chem comp atom: H41,DC
reference to chem comp: DC
chem comp bond.atom id 1: N4
chem comp bond.atom id 2: H41
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 69
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N4,H42,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N4,DC
reference to chem comp atom: H42,DC
reference to chem comp: DC
chem comp bond.atom id 1: N4
chem comp bond.atom id 2: H42
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 70
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5,C6,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,DC
reference to chem comp atom: C6,DC
reference to chem comp: DC
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: C6
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 71
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C5,H5,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,DC
reference to chem comp atom: H5,DC
reference to chem comp: DC
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: H5
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 72
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C6,H6,DC
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C6,DC
reference to chem comp atom: H6,DC
reference to chem comp: DC
chem comp bond.atom id 1: C6
chem comp bond.atom id 2: H6
chem comp bond.comp id: DC
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 73
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP3,P,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP3,DG
reference to chem comp atom: P,DG
reference to chem comp: DG
chem comp bond.atom id 1: OP3
chem comp bond.atom id 2: P
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 74
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP3,HOP3,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP3,DG
reference to chem comp atom: HOP3,DG
reference to chem comp: DG
chem comp bond.atom id 1: OP3
chem comp bond.atom id 2: HOP3
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 75
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

P,OP1,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,DG
reference to chem comp atom: OP1,DG
reference to chem comp: DG
chem comp bond.atom id 1: P
chem comp bond.atom id 2: OP1
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 76
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

P,OP2,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,DG
reference to chem comp atom: OP2,DG
reference to chem comp: DG
chem comp bond.atom id 1: P
chem comp bond.atom id 2: OP2
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 77
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

P,O5&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,DG
reference to chem comp atom: O5&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: P
chem comp bond.atom id 2: O5'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 78
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP2,HOP2,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP2,DG
reference to chem comp atom: HOP2,DG
reference to chem comp: DG
chem comp bond.atom id 1: OP2
chem comp bond.atom id 2: HOP2
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 79
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O5&#39;,C5&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O5&#39;,DG
reference to chem comp atom: C5&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: O5'
chem comp bond.atom id 2: C5'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 80
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,C4&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,DG
reference to chem comp atom: C4&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: C4'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 81
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H5&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,DG
reference to chem comp atom: H5&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H5'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 82
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H5&#39;&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,DG
reference to chem comp atom: H5&#39;&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H5''
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 83
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,O4&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,DG
reference to chem comp atom: O4&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: O4'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 84
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,C3&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,DG
reference to chem comp atom: C3&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: C3'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 85
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,H4&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,DG
reference to chem comp atom: H4&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: H4'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 86
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O4&#39;,C1&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O4&#39;,DG
reference to chem comp atom: C1&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: O4'
chem comp bond.atom id 2: C1'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 87
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,O3&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,DG
reference to chem comp atom: O3&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: O3'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 88
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,C2&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,DG
reference to chem comp atom: C2&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: C2'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 89
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,H3&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,DG
reference to chem comp atom: H3&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: H3'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 90
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O3&#39;,HO3&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O3&#39;,DG
reference to chem comp atom: HO3&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: O3'
chem comp bond.atom id 2: HO3'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 91
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,C1&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,DG
reference to chem comp atom: C1&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: C1'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 92
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,H2&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,DG
reference to chem comp atom: H2&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: H2'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 93
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,H2&#39;&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,DG
reference to chem comp atom: H2&#39;&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: H2''
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 94
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,N9,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,DG
reference to chem comp atom: N9,DG
reference to chem comp: DG
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: N9
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 95
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,H1&#39;,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,DG
reference to chem comp atom: H1&#39;,DG
reference to chem comp: DG
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: H1'
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 96
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N9,C8,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N9,DG
reference to chem comp atom: C8,DG
reference to chem comp: DG
chem comp bond.atom id 1: N9
chem comp bond.atom id 2: C8
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 97
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N9,C4,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N9,DG
reference to chem comp atom: C4,DG
reference to chem comp: DG
chem comp bond.atom id 1: N9
chem comp bond.atom id 2: C4
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 98
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C8,N7,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C8,DG
reference to chem comp atom: N7,DG
reference to chem comp: DG
chem comp bond.atom id 1: C8
chem comp bond.atom id 2: N7
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 99
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C8,H8,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C8,DG
reference to chem comp atom: H8,DG
reference to chem comp: DG
chem comp bond.atom id 1: C8
chem comp bond.atom id 2: H8
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 100
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N7,C5,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N7,DG
reference to chem comp atom: C5,DG
reference to chem comp: DG
chem comp bond.atom id 1: N7
chem comp bond.atom id 2: C5
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 101
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5,C6,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,DG
reference to chem comp atom: C6,DG
reference to chem comp: DG
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: C6
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 102
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5,C4,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,DG
reference to chem comp atom: C4,DG
reference to chem comp: DG
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: C4
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: Y
chem comp bond.pdbx ordinal: 103
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C6,O6,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C6,DG
reference to chem comp atom: O6,DG
reference to chem comp: DG
chem comp bond.atom id 1: C6
chem comp bond.atom id 2: O6
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 104
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C6,N1,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C6,DG
reference to chem comp atom: N1,DG
reference to chem comp: DG
chem comp bond.atom id 1: C6
chem comp bond.atom id 2: N1
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 105
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N1,C2,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N1,DG
reference to chem comp atom: C2,DG
reference to chem comp: DG
chem comp bond.atom id 1: N1
chem comp bond.atom id 2: C2
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 106
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N1,H1,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N1,DG
reference to chem comp atom: H1,DG
reference to chem comp: DG
chem comp bond.atom id 1: N1
chem comp bond.atom id 2: H1
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 107
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2,N2,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2,DG
reference to chem comp atom: N2,DG
reference to chem comp: DG
chem comp bond.atom id 1: C2
chem comp bond.atom id 2: N2
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 108
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2,N3,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2,DG
reference to chem comp atom: N3,DG
reference to chem comp: DG
chem comp bond.atom id 1: C2
chem comp bond.atom id 2: N3
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 109
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

N2,H21,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N2,DG
reference to chem comp atom: H21,DG
reference to chem comp: DG
chem comp bond.atom id 1: N2
chem comp bond.atom id 2: H21
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 110
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N2,H22,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N2,DG
reference to chem comp atom: H22,DG
reference to chem comp: DG
chem comp bond.atom id 1: N2
chem comp bond.atom id 2: H22
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 111
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N3,C4,DG
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N3,DG
reference to chem comp atom: C4,DG
reference to chem comp: DG
chem comp bond.atom id 1: N3
chem comp bond.atom id 2: C4
chem comp bond.comp id: DG
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 112
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O,H1,HOH
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O,HOH
reference to chem comp atom: H1,HOH
reference to chem comp: HOH
chem comp bond.atom id 1: O
chem comp bond.atom id 2: H1
chem comp bond.comp id: HOH
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 113
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O,H2,HOH
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O,HOH
reference to chem comp atom: H2,HOH
reference to chem comp: HOH
chem comp bond.atom id 1: O
chem comp bond.atom id 2: H2
chem comp bond.comp id: HOH
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 114
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP3,P,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP3,UMS
reference to chem comp atom: P,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: OP3
chem comp bond.atom id 2: P
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 115
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP3,HOP3,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP3,UMS
reference to chem comp atom: HOP3,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: OP3
chem comp bond.atom id 2: HOP3
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 116
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

P,OP1,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,UMS
reference to chem comp atom: OP1,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: P
chem comp bond.atom id 2: OP1
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 117
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

P,OP2,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,UMS
reference to chem comp atom: OP2,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: P
chem comp bond.atom id 2: OP2
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 118
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

P,O5&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,UMS
reference to chem comp atom: O5&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: P
chem comp bond.atom id 2: O5'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 119
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

OP2,HOP2,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: OP2,UMS
reference to chem comp atom: HOP2,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: OP2
chem comp bond.atom id 2: HOP2
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 120
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O5&#39;,C5&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O5&#39;,UMS
reference to chem comp atom: C5&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: O5'
chem comp bond.atom id 2: C5'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 121
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,C4&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,UMS
reference to chem comp atom: C4&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: C4'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 122
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H5&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,UMS
reference to chem comp atom: H5&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H5'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 123
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H5&#39;2,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,UMS
reference to chem comp atom: H5&#39;2,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H5'2
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 124
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,O4&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,UMS
reference to chem comp atom: O4&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: O4'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 125
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,C3&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,UMS
reference to chem comp atom: C3&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: C3'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 126
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,H4&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,UMS
reference to chem comp atom: H4&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: H4'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 127
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O4&#39;,C1&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O4&#39;,UMS
reference to chem comp atom: C1&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: O4'
chem comp bond.atom id 2: C1'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 128
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,O3&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,UMS
reference to chem comp atom: O3&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: O3'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 129
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,C2&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,UMS
reference to chem comp atom: C2&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: C2'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 130
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,H3&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,UMS
reference to chem comp atom: H3&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: H3'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 131
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O3&#39;,HO3&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O3&#39;,UMS
reference to chem comp atom: HO3&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: O3'
chem comp bond.atom id 2: HO3'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 132
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,SE2&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,UMS
reference to chem comp atom: SE2&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: SE2'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 133
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,C1&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,UMS
reference to chem comp atom: C1&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: C1'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 134
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,H2&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,UMS
reference to chem comp atom: H2&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: H2'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 135
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

SE2&#39;,CA&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: SE2&#39;,UMS
reference to chem comp atom: CA&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: SE2'
chem comp bond.atom id 2: CA'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 136
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,N1,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,UMS
reference to chem comp atom: N1,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: N1
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 137
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,H1&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,UMS
reference to chem comp atom: H1&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: H1'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 138
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

CA&#39;,HA&#39;,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: CA&#39;,UMS
reference to chem comp atom: HA&#39;,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: CA'
chem comp bond.atom id 2: HA'
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 139
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

CA&#39;,HA&#39;2,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: CA&#39;,UMS
reference to chem comp atom: HA&#39;2,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: CA'
chem comp bond.atom id 2: HA'2
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 140
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

CA&#39;,HA&#39;3,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: CA&#39;,UMS
reference to chem comp atom: HA&#39;3,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: CA'
chem comp bond.atom id 2: HA'3
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 141
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N1,C2,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N1,UMS
reference to chem comp atom: C2,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: N1
chem comp bond.atom id 2: C2
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 142
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N1,C6,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N1,UMS
reference to chem comp atom: C6,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: N1
chem comp bond.atom id 2: C6
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 143
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2,O2,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2,UMS
reference to chem comp atom: O2,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C2
chem comp bond.atom id 2: O2
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 144
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C2,N3,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2,UMS
reference to chem comp atom: N3,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C2
chem comp bond.atom id 2: N3
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 145
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N3,C4,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N3,UMS
reference to chem comp atom: C4,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: N3
chem comp bond.atom id 2: C4
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 146
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N3,H3,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N3,UMS
reference to chem comp atom: H3,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: N3
chem comp bond.atom id 2: H3
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 147
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4,O4,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4,UMS
reference to chem comp atom: O4,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C4
chem comp bond.atom id 2: O4
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 148
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C4,C5,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4,UMS
reference to chem comp atom: C5,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C4
chem comp bond.atom id 2: C5
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 149
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5,C6,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,UMS
reference to chem comp atom: C6,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: C6
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 150
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C5,H5,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,UMS
reference to chem comp atom: H5,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: H5
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 151
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C6,H6,UMS
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C6,UMS
reference to chem comp atom: H6,UMS
reference to chem comp: UMS
chem comp bond.atom id 1: C6
chem comp bond.atom id 2: H6
chem comp bond.comp id: UMS
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 152
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

P,O2P,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,US2
reference to chem comp atom: O2P,US2
reference to chem comp: US2
chem comp bond.atom id 1: P
chem comp bond.atom id 2: O2P
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 153
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N1,C6,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N1,US2
reference to chem comp atom: C6,US2
reference to chem comp: US2
chem comp bond.atom id 1: N1
chem comp bond.atom id 2: C6
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 154
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N1,C1&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N1,US2
reference to chem comp atom: C1&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: N1
chem comp bond.atom id 2: C1'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 155
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C6,H6,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C6,US2
reference to chem comp atom: H6,US2
reference to chem comp: US2
chem comp bond.atom id 1: C6
chem comp bond.atom id 2: H6
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 156
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2,N1,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2,US2
reference to chem comp atom: N1,US2
reference to chem comp: US2
chem comp bond.atom id 1: C2
chem comp bond.atom id 2: N1
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 157
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O2,C2,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O2,US2
reference to chem comp atom: C2,US2
reference to chem comp: US2
chem comp bond.atom id 1: O2
chem comp bond.atom id 2: C2
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 158
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

N3,C4,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N3,US2
reference to chem comp atom: C4,US2
reference to chem comp: US2
chem comp bond.atom id 1: N3
chem comp bond.atom id 2: C4
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 159
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N3,C2,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N3,US2
reference to chem comp atom: C2,US2
reference to chem comp: US2
chem comp bond.atom id 1: N3
chem comp bond.atom id 2: C2
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 160
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

N3,HN3,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: N3,US2
reference to chem comp atom: HN3,US2
reference to chem comp: US2
chem comp bond.atom id 1: N3
chem comp bond.atom id 2: HN3
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 161
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4,C5,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4,US2
reference to chem comp atom: C5,US2
reference to chem comp: US2
chem comp bond.atom id 1: C4
chem comp bond.atom id 2: C5
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 162
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O4,C4,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O4,US2
reference to chem comp atom: C4,US2
reference to chem comp: US2
chem comp bond.atom id 1: O4
chem comp bond.atom id 2: C4
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 163
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

C5,S5,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,US2
reference to chem comp atom: S5,US2
reference to chem comp: US2
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: S5
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 164
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5,C6,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5,US2
reference to chem comp atom: C6,US2
reference to chem comp: US2
chem comp bond.atom id 1: C5
chem comp bond.atom id 2: C6
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 165
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

S5,C5A,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: S5,US2
reference to chem comp atom: C5A,US2
reference to chem comp: US2
chem comp bond.atom id 1: S5
chem comp bond.atom id 2: C5A
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 166
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5A,H15A,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5A,US2
reference to chem comp atom: H15A,US2
reference to chem comp: US2
chem comp bond.atom id 1: C5A
chem comp bond.atom id 2: H15A
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 167
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5A,H25A,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5A,US2
reference to chem comp atom: H25A,US2
reference to chem comp: US2
chem comp bond.atom id 1: C5A
chem comp bond.atom id 2: H25A
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 168
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5A,H35A,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5A,US2
reference to chem comp atom: H35A,US2
reference to chem comp: US2
chem comp bond.atom id 1: C5A
chem comp bond.atom id 2: H35A
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 169
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,O4&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,US2
reference to chem comp atom: O4&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: O4'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 170
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,C2&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,US2
reference to chem comp atom: C2&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: C2'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 171
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C1&#39;,H1&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C1&#39;,US2
reference to chem comp atom: H1&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C1'
chem comp bond.atom id 2: H1'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 172
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O4&#39;,C4&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O4&#39;,US2
reference to chem comp atom: C4&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: O4'
chem comp bond.atom id 2: C4'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 173
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,C3&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,US2
reference to chem comp atom: C3&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: C3'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 174
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,C5&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,US2
reference to chem comp atom: C5&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: C5'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 175
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C4&#39;,H4&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C4&#39;,US2
reference to chem comp atom: H4&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C4'
chem comp bond.atom id 2: H4'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 176
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,O3&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,US2
reference to chem comp atom: O3&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: O3'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 177
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C3&#39;,H3&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C3&#39;,US2
reference to chem comp atom: H3&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C3'
chem comp bond.atom id 2: H3'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 178
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O3&#39;,HO3&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O3&#39;,US2
reference to chem comp atom: HO3&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: O3'
chem comp bond.atom id 2: HO3'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 179
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,C3&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,US2
reference to chem comp atom: C3&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: C3'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 180
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,H12&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,US2
reference to chem comp atom: H12&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: H12'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 181
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C2&#39;,H22&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C2&#39;,US2
reference to chem comp atom: H22&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C2'
chem comp bond.atom id 2: H22'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 182
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H15&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,US2
reference to chem comp atom: H15&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H15'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 183
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

C5&#39;,H25&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: C5&#39;,US2
reference to chem comp atom: H25&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: C5'
chem comp bond.atom id 2: H25'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 184
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O5&#39;,C5&#39;,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O5&#39;,US2
reference to chem comp atom: C5&#39;,US2
reference to chem comp: US2
chem comp bond.atom id 1: O5'
chem comp bond.atom id 2: C5'
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 185
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O5&#39;,P,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O5&#39;,US2
reference to chem comp atom: P,US2
reference to chem comp: US2
chem comp bond.atom id 1: O5'
chem comp bond.atom id 2: P
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 186
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O1P,P,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O1P,US2
reference to chem comp atom: P,US2
reference to chem comp: US2
chem comp bond.atom id 1: O1P
chem comp bond.atom id 2: P
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 187
chem comp bond.pdbx stereo config: N
chem comp bond.value order: doub

P,O3P,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: P,US2
reference to chem comp atom: O3P,US2
reference to chem comp: US2
chem comp bond.atom id 1: P
chem comp bond.atom id 2: O3P
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 188
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O2P,HO2P,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O2P,US2
reference to chem comp atom: HO2P,US2
reference to chem comp: US2
chem comp bond.atom id 1: O2P
chem comp bond.atom id 2: HO2P
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 189
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

O3P,HO3P,US2
type: chem comp bond
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp atom: O3P,US2
reference to chem comp atom: HO3P,US2
reference to chem comp: US2
chem comp bond.atom id 1: O3P
chem comp bond.atom id 2: HO3P
chem comp bond.comp id: US2
chem comp bond.pdbx aromatic flag: N
chem comp bond.pdbx ordinal: 190
chem comp bond.pdbx stereo config: N
chem comp bond.value order: sing

primary
type: citation
of datablock: 5-SMe-dU containing DNA octamer
citation.id: primary
citation.country: UK
citation.journal abbrev: Nucleic Acids Res.
citation.journal id ASTM: NARHAD
citation.journal id CSD: 0389
citation.journal id ISSN: 0305-1048
citation.journal volume: 40
citation.page first: 8111
citation.page last: 8118
citation.pdbx database id DOI: 10.1093/nar/gks426
citation.pdbx database id pub med: 22641848
citation.title: Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
citation.year: 2012
link to doi: doi:10.1093/nar/gks426
link to pubmed: pubmed:22641848
references: pubmed:22641848
referenced by citation author: primary,Huang, Z.,8
referenced by citation author: primary,Sheng, J.,1
referenced by citation author: primary,Zhang, W.,2
referenced by citation author: primary,Hassan, A.E.,3
referenced by citation author: primary,Gan, J.,4
referenced by citation author: primary,Soares, A.S.,5
referenced by citation author: primary,Geng, S.,6
referenced by citation author: primary,Ren, Y.,7

primary,Sheng, J.,1
type: citation author
of datablock: 5-SMe-dU containing DNA octamer
reference to citation: primary
citation author.citation id: primary
citation author.name: Sheng, J.
citation author.ordinal: 1

primary,Zhang, W.,2
type: citation author
of datablock: 5-SMe-dU containing DNA octamer
reference to citation: primary
citation author.citation id: primary
citation author.name: Zhang, W.
citation author.ordinal: 2

primary,Hassan, A.E.,3
type: citation author
of datablock: 5-SMe-dU containing DNA octamer
reference to citation: primary
citation author.citation id: primary
citation author.name: Hassan, A.E.
citation author.ordinal: 3

primary,Gan, J.,4
type: citation author
of datablock: 5-SMe-dU containing DNA octamer
reference to citation: primary
citation author.citation id: primary
citation author.name: Gan, J.
citation author.ordinal: 4

primary,Soares, A.S.,5
type: citation author
of datablock: 5-SMe-dU containing DNA octamer
reference to citation: primary
citation author.citation id: primary
citation author.name: Soares, A.S.
citation author.ordinal: 5

primary,Geng, S.,6
type: citation author
of datablock: 5-SMe-dU containing DNA octamer
reference to citation: primary
citation author.citation id: primary
citation author.name: Geng, S.
citation author.ordinal: 6

primary,Ren, Y.,7
type: citation author
of datablock: 5-SMe-dU containing DNA octamer
reference to citation: primary
citation author.citation id: primary
citation author.name: Ren, Y.
citation author.ordinal: 7

primary,Huang, Z.,8
type: citation author
of datablock: 5-SMe-dU containing DNA octamer
reference to citation: primary
citation author.citation id: primary
citation author.name: Huang, Z.
citation author.ordinal: 8

3IKI,PDB
type: database 2
of datablock: 5-SMe-dU containing DNA octamer
database 2.database code: 3IKI
database 2.database id: PDB
database 2.pdbx DOI: 10.2210/pdb3iki/pdb
database 2.pdbx database accession: pdb_00003iki

NA0114,NDB
type: database 2
of datablock: 5-SMe-dU containing DNA octamer
database 2.database code: NA0114
database 2.database id: NDB

RCSB054525,RCSB
type: database 2
of datablock: 5-SMe-dU containing DNA octamer
database 2.database code: RCSB054525
database 2.database id: RCSB

D 1000054525,WWPDB
type: database 2
of datablock: 5-SMe-dU containing DNA octamer
database 2.database code: D_1000054525
database 2.database id: WWPDB

3IKI
type: database PDB matrix
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
database PDB matrix.entry id: 3IKI
database PDB matrix.origx11: 1
database PDB matrix.origx12: 0
database PDB matrix.origx13: 0
database PDB matrix.origx21: 0
database PDB matrix.origx22: 1
database PDB matrix.origx23: 0
database PDB matrix.origx31: 0
database PDB matrix.origx32: 0
database PDB matrix.origx33: 1
database PDB matrix.origx vector1: 0
database PDB matrix.origx vector2: 0
database PDB matrix.origx vector3: 0

http://rdf.wwpdb.org/pdb/3IKI/diffrn/1
type: diffrn
of datablock: 5-SMe-dU containing DNA octamer
reference to exptl crystal: http://rdf.wwpdb.org/pdb/3IKI/exptl_crystal/1
diffrn.id: 1
diffrn.ambient temp: 99
diffrn.crystal id: 1
referenced by diffrn detector: http://rdf.wwpdb.org/pdb/3IKI/diffrn_detector/1
referenced by diffrn radiation: http://rdf.wwpdb.org/pdb/3IKI/diffrn_radiation/1
referenced by diffrn source: http://rdf.wwpdb.org/pdb/3IKI/diffrn_source/1

http://rdf.wwpdb.org/pdb/3IKI/exptl_crystal/1
referenced by diffrn: http://rdf.wwpdb.org/pdb/3IKI/diffrn/1
type: exptl crystal
of datablock: 5-SMe-dU containing DNA octamer
exptl crystal.id: 1
exptl crystal.density matthews: 2.15
exptl crystal.density percent sol: 42.67
referenced by exptl crystal grow: http://rdf.wwpdb.org/pdb/3IKI/exptl_crystal_grow/1

http://rdf.wwpdb.org/pdb/3IKI/diffrn_detector/1
type: diffrn detector
of datablock: 5-SMe-dU containing DNA octamer
reference to diffrn: http://rdf.wwpdb.org/pdb/3IKI/diffrn/1
diffrn detector.diffrn id: 1
diffrn detector.detector: CCD
diffrn detector.pdbx collection date: 2008-10-22
diffrn detector.type: ADSC QUANTUM 4

http://rdf.wwpdb.org/pdb/3IKI/diffrn_radiation/1
type: diffrn radiation
of datablock: 5-SMe-dU containing DNA octamer
reference to diffrn: http://rdf.wwpdb.org/pdb/3IKI/diffrn/1
diffrn radiation.diffrn id: 1
diffrn radiation.monochromator: channel-cut Si(111) monochromator
diffrn radiation.pdbx diffrn protocol: SINGLE WAVELENGTH
diffrn radiation.pdbx monochromatic or laue m l: M
diffrn radiation.pdbx scattering type: x-ray
diffrn radiation.wavelength id: 1

http://rdf.wwpdb.org/pdb/3IKI/diffrn_radiation_wavelength/1
type: diffrn radiation wavelength
of datablock: 5-SMe-dU containing DNA octamer
diffrn radiation wavelength.id: 1
diffrn radiation wavelength.wavelength: 0.9795
diffrn radiation wavelength.wt: 1

http://rdf.wwpdb.org/pdb/3IKI/diffrn_source/1
type: diffrn source
of datablock: 5-SMe-dU containing DNA octamer
reference to diffrn: http://rdf.wwpdb.org/pdb/3IKI/diffrn/1
diffrn source.diffrn id: 1
diffrn source.pdbx synchrotron beamline: X12B
diffrn source.pdbx synchrotron site: NSLS
diffrn source.pdbx wavelength list: 0.9795
diffrn source.source: SYNCHROTRON
diffrn source.type: NSLS BEAMLINE X12B

http://rdf.wwpdb.org/pdb/3IKI/entity/1
type: entity
of datablock: 5-SMe-dU containing DNA octamer
entity.id: 1
entity.formula weight: 2537.642
entity.pdbx description: 5'-D(*GP*(UMS)P*GP*(US2)P*AP*CP*AP*C)-3'
entity.pdbx number of molecules: 1
entity.src method: syn
entity.type: polymer
referenced by entity poly: http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
referenced by struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
referenced by struct ref: http://rdf.wwpdb.org/pdb/3IKI/struct_ref/1
referenced by pdbx entity src syn: 1,1

http://rdf.wwpdb.org/pdb/3IKI/entity/2
type: entity
of datablock: 5-SMe-dU containing DNA octamer
entity.id: 2
entity.formula weight: 24.305
entity.pdbx description: MAGNESIUM ION
entity.pdbx number of molecules: 1
entity.src method: syn
entity.type: non-polymer
referenced by struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/B
referenced by pdbx entity nonpoly: http://rdf.wwpdb.org/pdb/3IKI/pdbx_entity_nonpoly/2

http://rdf.wwpdb.org/pdb/3IKI/entity/3
type: entity
of datablock: 5-SMe-dU containing DNA octamer
entity.id: 3
entity.formula weight: 18.015
entity.pdbx description: water
entity.pdbx number of molecules: 38
entity.src method: nat
entity.type: water
referenced by struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/C
referenced by pdbx entity nonpoly: http://rdf.wwpdb.org/pdb/3IKI/pdbx_entity_nonpoly/3

http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
type: entity poly
of datablock: 5-SMe-dU containing DNA octamer
reference to entity: http://rdf.wwpdb.org/pdb/3IKI/entity/1
entity poly.entity id: 1
entity poly.nstd linkage: no
entity poly.nstd monomer: yes
entity poly.pdbx seq one letter code: (DG)(UMS)(DG)(US2)(DA)(DC)(DA)(DC)
entity poly.pdbx seq one letter code can: GUGUACAC
entity poly.pdbx strand id: A
entity poly.type: polydeoxyribonucleotide
referenced by entity poly seq: 1,DC,8
referenced by entity poly seq: 1,DG,1
referenced by entity poly seq: 1,UMS,2
referenced by entity poly seq: 1,DG,3
referenced by entity poly seq: 1,US2,4
referenced by entity poly seq: 1,DA,5
referenced by entity poly seq: 1,DC,6
referenced by entity poly seq: 1,DA,7

1,DG,1
type: entity poly seq
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 1
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,1

1,UMS,2
type: entity poly seq
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: UMS
reference to entity poly: http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: UMS
entity poly seq.num: 2
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,UMS,2

1,DG,3
type: entity poly seq
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 3
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,3

1,US2,4
type: entity poly seq
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: US2
reference to entity poly: http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: US2
entity poly seq.num: 4
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,US2,4

1,DA,5
type: entity poly seq
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
reference to entity poly: http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DA
entity poly seq.num: 5
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DA,5

1,DC,6
type: entity poly seq
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
reference to entity poly: http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DC
entity poly seq.num: 6
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DC,6

1,DA,7
type: entity poly seq
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DA
reference to entity poly: http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DA
entity poly seq.num: 7
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DA,7

1,DC,8
type: entity poly seq
of datablock: 5-SMe-dU containing DNA octamer
reference to chem comp: DC
reference to entity poly: http://rdf.wwpdb.org/pdb/3IKI/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DC
entity poly seq.num: 8
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DC,8

3IKI,X-RAY DIFFRACTION
type: exptl
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
exptl.entry id: 3IKI
exptl.method: X-RAY DIFFRACTION
exptl.crystals number: 1

http://rdf.wwpdb.org/pdb/3IKI/exptl_crystal_grow/1
type: exptl crystal grow
of datablock: 5-SMe-dU containing DNA octamer
reference to exptl crystal: http://rdf.wwpdb.org/pdb/3IKI/exptl_crystal/1
exptl crystal grow.crystal id: 1
exptl crystal grow.method: VAPOR DIFFUSION, HANGING DROP
exptl crystal grow.p h: 7
exptl crystal grow.pdbx details: 10% v / v MPD, 40 mM Na Cacodylate pH 7.0, 12 mM Spermine tetra-HCl, 40 mM Lithium Chloride, 80 mM Strontium Chloride / 20 mM Magnesium Chloride, VAPOR DIFFUSION, HANGING DROP, temperature 293K
exptl crystal grow.temp: 293

3IKI,a-form double helix
type: ndb struct conf na
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
ndb struct conf na.entry id: 3IKI
ndb struct conf na.feature: a-form double helix

3IKI,internal loop
type: ndb struct conf na
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
ndb struct conf na.entry id: 3IKI
ndb struct conf na.feature: internal loop

A,DG,1,1 555,A,DC,8,7 555,1
type: ndb struct na base pair
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DG
ndb struct na base pair.i label seq id: 1
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: A
ndb struct na base pair.j label comp id: DC
ndb struct na base pair.j label seq id: 8
ndb struct na base pair.j symmetry: 7_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -19.369
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 19
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 1
ndb struct na base pair.j auth asym id: A
ndb struct na base pair.j auth seq id: 8
ndb struct na base pair.opening: -2.36
ndb struct na base pair.pair name: A_DG1:DC8_A
ndb struct na base pair.pair number: 1
ndb struct na base pair.propeller: -13.573
ndb struct na base pair.shear: -0.35
ndb struct na base pair.stagger: -0.34
ndb struct na base pair.stretch: -0.123

A,UMS,2,1 555,A,DA,7,7 555,1
type: ndb struct na base pair
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: UMS
ndb struct na base pair.i label seq id: 2
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: A
ndb struct na base pair.j label comp id: DA
ndb struct na base pair.j label seq id: 7
ndb struct na base pair.j symmetry: 7_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -5.623
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 20
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 2
ndb struct na base pair.j auth asym id: A
ndb struct na base pair.j auth seq id: 7
ndb struct na base pair.opening: 2.831
ndb struct na base pair.pair name: A_UMS2:DA7_A
ndb struct na base pair.pair number: 2
ndb struct na base pair.propeller: -11.049
ndb struct na base pair.shear: -0.037
ndb struct na base pair.stagger: 0.142
ndb struct na base pair.stretch: -0.094

A,DG,3,1 555,A,DC,6,7 555,1
type: ndb struct na base pair
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DG
ndb struct na base pair.i label seq id: 3
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: A
ndb struct na base pair.j label comp id: DC
ndb struct na base pair.j label seq id: 6
ndb struct na base pair.j symmetry: 7_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -4.548
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 19
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 3
ndb struct na base pair.j auth asym id: A
ndb struct na base pair.j auth seq id: 6
ndb struct na base pair.opening: -0.012
ndb struct na base pair.pair name: A_DG3:DC6_A
ndb struct na base pair.pair number: 3
ndb struct na base pair.propeller: -13.598
ndb struct na base pair.shear: -0.255
ndb struct na base pair.stagger: 0.247
ndb struct na base pair.stretch: -0.231

A,DG,1,1 555,A,DC,8,1 555,1
type: ndb struct na base pair
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DG
ndb struct na base pair.i label seq id: 1
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: A
ndb struct na base pair.j label comp id: DC
ndb struct na base pair.j label seq id: 8
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -19.369
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 19
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 1
ndb struct na base pair.j auth asym id: A
ndb struct na base pair.j auth seq id: 8
ndb struct na base pair.opening: -2.36
ndb struct na base pair.pair name: A_DG1:DC8_A
ndb struct na base pair.pair number: 4
ndb struct na base pair.propeller: -13.573
ndb struct na base pair.shear: -0.35
ndb struct na base pair.stagger: -0.34
ndb struct na base pair.stretch: -0.123

A,UMS,2,1 555,A,DA,7,1 555,1
type: ndb struct na base pair
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: UMS
ndb struct na base pair.i label seq id: 2
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: A
ndb struct na base pair.j label comp id: DA
ndb struct na base pair.j label seq id: 7
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -5.623
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 20
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 2
ndb struct na base pair.j auth asym id: A
ndb struct na base pair.j auth seq id: 7
ndb struct na base pair.opening: 2.831
ndb struct na base pair.pair name: A_UMS2:DA7_A
ndb struct na base pair.pair number: 5
ndb struct na base pair.propeller: -11.049
ndb struct na base pair.shear: -0.037
ndb struct na base pair.stagger: 0.142
ndb struct na base pair.stretch: -0.094

A,DG,3,1 555,A,DC,6,1 555,1
type: ndb struct na base pair
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DG
ndb struct na base pair.i label seq id: 3
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: A
ndb struct na base pair.j label comp id: DC
ndb struct na base pair.j label seq id: 6
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -4.548
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 19
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 3
ndb struct na base pair.j auth asym id: A
ndb struct na base pair.j auth seq id: 6
ndb struct na base pair.opening: -0.012
ndb struct na base pair.pair name: A_DG3:DC6_A
ndb struct na base pair.pair number: 6
ndb struct na base pair.propeller: -13.598
ndb struct na base pair.shear: -0.255
ndb struct na base pair.stagger: 0.247
ndb struct na base pair.stretch: -0.231

A,A,DG,UMS,1,2,1 555,1 555,A,A,DC,DA,8,7,7 555,7 555,1
type: ndb struct na base pair step
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair step.i label asym id 1: A
ndb struct na base pair step.i label asym id 2: A
ndb struct na base pair step.i label comp id 1: DG
ndb struct na base pair step.i label comp id 2: UMS
ndb struct na base pair step.i label seq id 1: 1
ndb struct na base pair step.i label seq id 2: 2
ndb struct na base pair step.i symmetry 1: 1_555
ndb struct na base pair step.i symmetry 2: 1_555
ndb struct na base pair step.j label asym id 1: A
ndb struct na base pair step.j label asym id 2: A
ndb struct na base pair step.j label comp id 1: DC
ndb struct na base pair step.j label comp id 2: DA
ndb struct na base pair step.j label seq id 1: 8
ndb struct na base pair step.j label seq id 2: 7
ndb struct na base pair step.j symmetry 1: 7_555
ndb struct na base pair step.j symmetry 2: 7_555
ndb struct na base pair step.model number: 1
ndb struct na base pair step.helical rise: 2.419
ndb struct na base pair step.helical twist: 33.567
ndb struct na base pair step.i auth asym id 1: A
ndb struct na base pair step.i auth asym id 2: A
ndb struct na base pair step.i auth seq id 1: 1
ndb struct na base pair step.i auth seq id 2: 2
ndb struct na base pair step.inclination: 23.902
ndb struct na base pair step.j auth asym id 1: A
ndb struct na base pair step.j auth asym id 2: A
ndb struct na base pair step.j auth seq id 1: 8
ndb struct na base pair step.j auth seq id 2: 7
ndb struct na base pair step.rise: 3.04
ndb struct na base pair step.roll: 13.421
ndb struct na base pair step.shift: 0.539
ndb struct na base pair step.slide: -0.832
ndb struct na base pair step.step name: AA_DG1UMS2:DA7DC8_AA
ndb struct na base pair step.step number: 1
ndb struct na base pair step.tilt: -2.846
ndb struct na base pair step.tip: 5.068
ndb struct na base pair step.twist: 30.709
ndb struct na base pair step.x displacement: -3.364
ndb struct na base pair step.y displacement: -1.341

A,A,UMS,DG,2,3,1 555,1 555,A,A,DA,DC,7,6,7 555,7 555,1
type: ndb struct na base pair step
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair step.i label asym id 1: A
ndb struct na base pair step.i label asym id 2: A
ndb struct na base pair step.i label comp id 1: UMS
ndb struct na base pair step.i label comp id 2: DG
ndb struct na base pair step.i label seq id 1: 2
ndb struct na base pair step.i label seq id 2: 3
ndb struct na base pair step.i symmetry 1: 1_555
ndb struct na base pair step.i symmetry 2: 1_555
ndb struct na base pair step.j label asym id 1: A
ndb struct na base pair step.j label asym id 2: A
ndb struct na base pair step.j label comp id 1: DA
ndb struct na base pair step.j label comp id 2: DC
ndb struct na base pair step.j label seq id 1: 7
ndb struct na base pair step.j label seq id 2: 6
ndb struct na base pair step.j symmetry 1: 7_555
ndb struct na base pair step.j symmetry 2: 7_555
ndb struct na base pair step.model number: 1
ndb struct na base pair step.helical rise: 2.283
ndb struct na base pair step.helical twist: 30.875
ndb struct na base pair step.i auth asym id 1: A
ndb struct na base pair step.i auth asym id 2: A
ndb struct na base pair step.i auth seq id 1: 2
ndb struct na base pair step.i auth seq id 2: 3
ndb struct na base pair step.inclination: 23.076
ndb struct na base pair step.j auth asym id 1: A
ndb struct na base pair step.j auth asym id 2: A
ndb struct na base pair step.j auth seq id 1: 7
ndb struct na base pair step.j auth seq id 2: 6
ndb struct na base pair step.rise: 3.075
ndb struct na base pair step.roll: 11.978
ndb struct na base pair step.shift: 0.694
ndb struct na base pair step.slide: -1.478
ndb struct na base pair step.step name: AA_UMS2DG3:DC6DA7_AA
ndb struct na base pair step.step number: 2
ndb struct na base pair step.tilt: 0.004
ndb struct na base pair step.tip: -0.008
ndb struct na base pair step.twist: 28.509
ndb struct na base pair step.x displacement: -4.762
ndb struct na base pair step.y displacement: -1.303

A,A,DG,UMS,1,2,1 555,1 555,A,A,DC,DA,8,7,1 555,1 555,1
type: ndb struct na base pair step
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair step.i label asym id 1: A
ndb struct na base pair step.i label asym id 2: A
ndb struct na base pair step.i label comp id 1: DG
ndb struct na base pair step.i label comp id 2: UMS
ndb struct na base pair step.i label seq id 1: 1
ndb struct na base pair step.i label seq id 2: 2
ndb struct na base pair step.i symmetry 1: 1_555
ndb struct na base pair step.i symmetry 2: 1_555
ndb struct na base pair step.j label asym id 1: A
ndb struct na base pair step.j label asym id 2: A
ndb struct na base pair step.j label comp id 1: DC
ndb struct na base pair step.j label comp id 2: DA
ndb struct na base pair step.j label seq id 1: 8
ndb struct na base pair step.j label seq id 2: 7
ndb struct na base pair step.j symmetry 1: 1_555
ndb struct na base pair step.j symmetry 2: 1_555
ndb struct na base pair step.model number: 1
ndb struct na base pair step.helical rise: 2.419
ndb struct na base pair step.helical twist: 33.567
ndb struct na base pair step.i auth asym id 1: A
ndb struct na base pair step.i auth asym id 2: A
ndb struct na base pair step.i auth seq id 1: 1
ndb struct na base pair step.i auth seq id 2: 2
ndb struct na base pair step.inclination: 23.902
ndb struct na base pair step.j auth asym id 1: A
ndb struct na base pair step.j auth asym id 2: A
ndb struct na base pair step.j auth seq id 1: 8
ndb struct na base pair step.j auth seq id 2: 7
ndb struct na base pair step.rise: 3.04
ndb struct na base pair step.roll: 13.421
ndb struct na base pair step.shift: 0.539
ndb struct na base pair step.slide: -0.832
ndb struct na base pair step.step name: AA_DG1UMS2:DA7DC8_AA
ndb struct na base pair step.step number: 3
ndb struct na base pair step.tilt: -2.846
ndb struct na base pair step.tip: 5.068
ndb struct na base pair step.twist: 30.709
ndb struct na base pair step.x displacement: -3.364
ndb struct na base pair step.y displacement: -1.341

A,A,UMS,DG,2,3,1 555,1 555,A,A,DA,DC,7,6,1 555,1 555,1
type: ndb struct na base pair step
of datablock: 5-SMe-dU containing DNA octamer
ndb struct na base pair step.i label asym id 1: A
ndb struct na base pair step.i label asym id 2: A
ndb struct na base pair step.i label comp id 1: UMS
ndb struct na base pair step.i label comp id 2: DG
ndb struct na base pair step.i label seq id 1: 2
ndb struct na base pair step.i label seq id 2: 3
ndb struct na base pair step.i symmetry 1: 1_555
ndb struct na base pair step.i symmetry 2: 1_555
ndb struct na base pair step.j label asym id 1: A
ndb struct na base pair step.j label asym id 2: A
ndb struct na base pair step.j label comp id 1: DA
ndb struct na base pair step.j label comp id 2: DC
ndb struct na base pair step.j label seq id 1: 7
ndb struct na base pair step.j label seq id 2: 6
ndb struct na base pair step.j symmetry 1: 1_555
ndb struct na base pair step.j symmetry 2: 1_555
ndb struct na base pair step.model number: 1
ndb struct na base pair step.helical rise: 2.283
ndb struct na base pair step.helical twist: 30.875
ndb struct na base pair step.i auth asym id 1: A
ndb struct na base pair step.i auth asym id 2: A
ndb struct na base pair step.i auth seq id 1: 2
ndb struct na base pair step.i auth seq id 2: 3
ndb struct na base pair step.inclination: 23.076
ndb struct na base pair step.j auth asym id 1: A
ndb struct na base pair step.j auth asym id 2: A
ndb struct na base pair step.j auth seq id 1: 7
ndb struct na base pair step.j auth seq id 2: 6
ndb struct na base pair step.rise: 3.075
ndb struct na base pair step.roll: 11.978
ndb struct na base pair step.shift: 0.694
ndb struct na base pair step.slide: -1.478
ndb struct na base pair step.step name: AA_UMS2DG3:DC6DA7_AA
ndb struct na base pair step.step number: 4
ndb struct na base pair step.tilt: 0.004
ndb struct na base pair step.tip: -0.008
ndb struct na base pair step.twist: 28.509
ndb struct na base pair step.x displacement: -4.762
ndb struct na base pair step.y displacement: -1.303

Structure model,1,5
type: pdbx audit revision category
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reference to pdbx audit revision history: Structure model,5
pdbx audit revision category.data content type: Structure model
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pdbx audit revision category.revision ordinal: 5
pdbx audit revision category.category: chem_comp_atom

Structure model,5
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referenced by pdbx audit revision category: Structure model,4,5
referenced by pdbx audit revision category: Structure model,5,5
referenced by pdbx audit revision category: Structure model,6,5
referenced by pdbx audit revision group: Structure model,5,5
referenced by pdbx audit revision group: Structure model,6,5
referenced by pdbx audit revision group: Structure model,7,5
referenced by pdbx audit revision group: Structure model,8,5
type: pdbx audit revision history
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pdbx audit revision history.data content type: Structure model
pdbx audit revision history.ordinal: 5
pdbx audit revision history.major revision: 1
pdbx audit revision history.minor revision: 4
pdbx audit revision history.revision date: 2023-09-06
referenced by pdbx audit revision item: Structure model,20,5
referenced by pdbx audit revision item: Structure model,1,5
referenced by pdbx audit revision item: Structure model,2,5
referenced by pdbx audit revision item: Structure model,3,5
referenced by pdbx audit revision item: Structure model,4,5
referenced by pdbx audit revision item: Structure model,5,5
referenced by pdbx audit revision item: Structure model,6,5
referenced by pdbx audit revision item: Structure model,7,5
referenced by pdbx audit revision item: Structure model,8,5
referenced by pdbx audit revision item: Structure model,9,5
referenced by pdbx audit revision item: Structure model,10,5
referenced by pdbx audit revision item: Structure model,11,5
referenced by pdbx audit revision item: Structure model,12,5
referenced by pdbx audit revision item: Structure model,13,5
referenced by pdbx audit revision item: Structure model,14,5
referenced by pdbx audit revision item: Structure model,15,5
referenced by pdbx audit revision item: Structure model,16,5
referenced by pdbx audit revision item: Structure model,17,5
referenced by pdbx audit revision item: Structure model,18,5
referenced by pdbx audit revision item: Structure model,19,5

Structure model,2,5
type: pdbx audit revision category
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reference to pdbx audit revision history: Structure model,5
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 2
pdbx audit revision category.revision ordinal: 5
pdbx audit revision category.category: chem_comp_bond

Structure model,3,5
type: pdbx audit revision category
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reference to pdbx audit revision history: Structure model,5
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 3
pdbx audit revision category.revision ordinal: 5
pdbx audit revision category.category: database_2

Structure model,4,5
type: pdbx audit revision category
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reference to pdbx audit revision history: Structure model,5
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 4
pdbx audit revision category.revision ordinal: 5
pdbx audit revision category.category: pdbx_initial_refinement_model

Structure model,5,5
type: pdbx audit revision category
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reference to pdbx audit revision history: Structure model,5
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 5
pdbx audit revision category.revision ordinal: 5
pdbx audit revision category.category: struct_conn

Structure model,6,5
type: pdbx audit revision category
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 6
pdbx audit revision category.revision ordinal: 5
pdbx audit revision category.category: struct_site

Structure model,1,1
type: pdbx audit revision details
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,1
pdbx audit revision details.data content type: Structure model
pdbx audit revision details.ordinal: 1
pdbx audit revision details.revision ordinal: 1
pdbx audit revision details.provider: repository
pdbx audit revision details.type: Initial release

Structure model,1
referenced by pdbx audit revision details: Structure model,1,1
type: pdbx audit revision history
of datablock: 5-SMe-dU containing DNA octamer
pdbx audit revision history.data content type: Structure model
pdbx audit revision history.ordinal: 1
pdbx audit revision history.major revision: 1
pdbx audit revision history.minor revision: 0
pdbx audit revision history.revision date: 2010-03-09

Structure model,1,2
type: pdbx audit revision group
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,2
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 1
pdbx audit revision group.revision ordinal: 2
pdbx audit revision group.group: Advisory

Structure model,2
referenced by pdbx audit revision group: Structure model,1,2
referenced by pdbx audit revision group: Structure model,2,2
type: pdbx audit revision history
of datablock: 5-SMe-dU containing DNA octamer
pdbx audit revision history.data content type: Structure model
pdbx audit revision history.ordinal: 2
pdbx audit revision history.major revision: 1
pdbx audit revision history.minor revision: 1
pdbx audit revision history.revision date: 2011-07-13

Structure model,2,2
type: pdbx audit revision group
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,2
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 2
pdbx audit revision group.revision ordinal: 2
pdbx audit revision group.group: Version format compliance

Structure model,3,3
type: pdbx audit revision group
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,3
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 3
pdbx audit revision group.revision ordinal: 3
pdbx audit revision group.group: Database references

Structure model,3
referenced by pdbx audit revision group: Structure model,3,3
type: pdbx audit revision history
of datablock: 5-SMe-dU containing DNA octamer
pdbx audit revision history.data content type: Structure model
pdbx audit revision history.ordinal: 3
pdbx audit revision history.major revision: 1
pdbx audit revision history.minor revision: 2
pdbx audit revision history.revision date: 2012-06-13

Structure model,4,4
type: pdbx audit revision group
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,4
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 4
pdbx audit revision group.revision ordinal: 4
pdbx audit revision group.group: Database references

Structure model,4
referenced by pdbx audit revision group: Structure model,4,4
type: pdbx audit revision history
of datablock: 5-SMe-dU containing DNA octamer
pdbx audit revision history.data content type: Structure model
pdbx audit revision history.ordinal: 4
pdbx audit revision history.major revision: 1
pdbx audit revision history.minor revision: 3
pdbx audit revision history.revision date: 2012-09-26

Structure model,5,5
type: pdbx audit revision group
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 5
pdbx audit revision group.revision ordinal: 5
pdbx audit revision group.group: Data collection

Structure model,6,5
type: pdbx audit revision group
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 6
pdbx audit revision group.revision ordinal: 5
pdbx audit revision group.group: Database references

Structure model,7,5
type: pdbx audit revision group
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 7
pdbx audit revision group.revision ordinal: 5
pdbx audit revision group.group: Derived calculations

Structure model,8,5
type: pdbx audit revision group
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 8
pdbx audit revision group.revision ordinal: 5
pdbx audit revision group.group: Refinement description

Structure model,1,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 1
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _database_2.pdbx_DOI

Structure model,2,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 2
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _database_2.pdbx_database_accession

Structure model,3,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 3
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.conn_type_id

Structure model,4,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 4
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.id

Structure model,5,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 5
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.pdbx_dist_value

Structure model,6,5
type: pdbx audit revision item
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reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 6
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.pdbx_leaving_atom_flag

Structure model,7,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 7
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr1_auth_comp_id

Structure model,8,5
type: pdbx audit revision item
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reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 8
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr1_auth_seq_id

Structure model,9,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 9
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr1_label_atom_id

Structure model,10,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 10
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr1_label_comp_id

Structure model,11,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 11
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr1_label_seq_id

Structure model,12,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 12
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr2_auth_comp_id

Structure model,13,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 13
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr2_auth_seq_id

Structure model,14,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 14
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr2_label_asym_id

Structure model,15,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 15
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr2_label_atom_id

Structure model,16,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 16
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr2_label_comp_id

Structure model,17,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 17
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_conn.ptnr2_label_seq_id

Structure model,18,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 18
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_site.pdbx_auth_asym_id

Structure model,19,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 19
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_site.pdbx_auth_comp_id

Structure model,20,5
type: pdbx audit revision item
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx audit revision history: Structure model,5
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 20
pdbx audit revision item.revision ordinal: 5
pdbx audit revision item.item: _struct_site.pdbx_auth_seq_id

3IKI
type: pdbx database status
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
pdbx database status.entry id: 3IKI
pdbx database status.deposit site: RCSB
pdbx database status.pdb format compatible: Y
pdbx database status.process site: RCSB
pdbx database status.recvd initial deposition date: 2009-08-05
pdbx database status.status code: REL
pdbx database status.status code sf: REL

http://rdf.wwpdb.org/pdb/3IKI/pdbx_entity_nonpoly/2
type: pdbx entity nonpoly
of datablock: 5-SMe-dU containing DNA octamer
reference to entity: http://rdf.wwpdb.org/pdb/3IKI/entity/2
pdbx entity nonpoly.entity id: 2
pdbx entity nonpoly.comp id: MG
pdbx entity nonpoly.name: MAGNESIUM ION

http://rdf.wwpdb.org/pdb/3IKI/pdbx_entity_nonpoly/3
type: pdbx entity nonpoly
of datablock: 5-SMe-dU containing DNA octamer
reference to entity: http://rdf.wwpdb.org/pdb/3IKI/entity/3
pdbx entity nonpoly.entity id: 3
pdbx entity nonpoly.comp id: HOH
pdbx entity nonpoly.name: water

1,1
type: pdbx entity src syn
of datablock: 5-SMe-dU containing DNA octamer
reference to entity: http://rdf.wwpdb.org/pdb/3IKI/entity/1
pdbx entity src syn.entity id: 1
pdbx entity src syn.pdbx src id: 1
pdbx entity src syn.details: Synthesized by solid phase synthesis
pdbx entity src syn.pdbx alt source flag: sample

http://rdf.wwpdb.org/pdb/3IKI/pdbx_initial_refinement_model/1
type: pdbx initial refinement model
of datablock: 5-SMe-dU containing DNA octamer
pdbx initial refinement model.id: 1
pdbx initial refinement model.accession code: 1DNS
pdbx initial refinement model.source name: PDB
pdbx initial refinement model.type: experimental model

B,1
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: B
pdbx nonpoly scheme.ndb seq num: 1
pdbx nonpoly scheme.auth mon id: MG
pdbx nonpoly scheme.auth seq num: 11
pdbx nonpoly scheme.entity id: 2
pdbx nonpoly scheme.mon id: MG
pdbx nonpoly scheme.pdb mon id: MG
pdbx nonpoly scheme.pdb seq num: 11
pdbx nonpoly scheme.pdb strand id: A

C,1
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 1
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 21
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 21
pdbx nonpoly scheme.pdb strand id: A

C,2
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 2
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 22
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 22
pdbx nonpoly scheme.pdb strand id: A

C,3
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 3
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 23
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 23
pdbx nonpoly scheme.pdb strand id: A

C,4
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 4
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 24
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 24
pdbx nonpoly scheme.pdb strand id: A

C,5
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 5
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 25
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 25
pdbx nonpoly scheme.pdb strand id: A

C,6
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 6
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 26
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 26
pdbx nonpoly scheme.pdb strand id: A

C,7
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 7
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 27
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 27
pdbx nonpoly scheme.pdb strand id: A

C,8
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 8
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 28
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 28
pdbx nonpoly scheme.pdb strand id: A

C,9
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 9
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 29
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 29
pdbx nonpoly scheme.pdb strand id: A

C,10
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 10
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 30
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 30
pdbx nonpoly scheme.pdb strand id: A

C,11
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 11
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 31
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 31
pdbx nonpoly scheme.pdb strand id: A

C,12
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 12
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 32
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 32
pdbx nonpoly scheme.pdb strand id: A

C,13
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 13
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 33
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 33
pdbx nonpoly scheme.pdb strand id: A

C,14
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 14
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 34
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 34
pdbx nonpoly scheme.pdb strand id: A

C,15
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 15
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 35
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 35
pdbx nonpoly scheme.pdb strand id: A

C,16
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 16
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 36
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 36
pdbx nonpoly scheme.pdb strand id: A

C,17
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 17
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 37
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 37
pdbx nonpoly scheme.pdb strand id: A

C,18
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 18
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 38
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 38
pdbx nonpoly scheme.pdb strand id: A

C,19
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 19
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 39
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 39
pdbx nonpoly scheme.pdb strand id: A

C,20
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 20
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 40
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 40
pdbx nonpoly scheme.pdb strand id: A

C,21
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 21
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 41
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 41
pdbx nonpoly scheme.pdb strand id: A

C,22
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 22
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 42
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 42
pdbx nonpoly scheme.pdb strand id: A

C,23
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 23
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 43
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 43
pdbx nonpoly scheme.pdb strand id: A

C,24
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 24
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 44
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 44
pdbx nonpoly scheme.pdb strand id: A

C,25
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 25
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 45
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 45
pdbx nonpoly scheme.pdb strand id: A

C,26
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 26
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 46
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 46
pdbx nonpoly scheme.pdb strand id: A

C,27
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 27
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 47
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 47
pdbx nonpoly scheme.pdb strand id: A

C,28
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 28
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 48
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 48
pdbx nonpoly scheme.pdb strand id: A

C,29
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 29
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 49
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 49
pdbx nonpoly scheme.pdb strand id: A

C,30
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 30
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 50
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 50
pdbx nonpoly scheme.pdb strand id: A

C,31
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 31
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 51
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 51
pdbx nonpoly scheme.pdb strand id: A

C,32
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 32
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 52
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 52
pdbx nonpoly scheme.pdb strand id: A

C,33
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 33
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 53
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 53
pdbx nonpoly scheme.pdb strand id: A

C,34
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 34
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 54
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 54
pdbx nonpoly scheme.pdb strand id: A

C,35
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 35
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 55
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 55
pdbx nonpoly scheme.pdb strand id: A

C,36
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 36
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 56
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 56
pdbx nonpoly scheme.pdb strand id: A

C,37
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 37
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 57
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 57
pdbx nonpoly scheme.pdb strand id: A

C,38
type: pdbx nonpoly scheme
of datablock: 5-SMe-dU containing DNA octamer
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 38
pdbx nonpoly scheme.auth mon id: HOH
pdbx nonpoly scheme.auth seq num: 58
pdbx nonpoly scheme.entity id: 3
pdbx nonpoly scheme.mon id: HOH
pdbx nonpoly scheme.pdb mon id: HOH
pdbx nonpoly scheme.pdb seq num: 58
pdbx nonpoly scheme.pdb strand id: A

A,1,DG,1
type: pdbx poly seq scheme
of datablock: 5-SMe-dU containing DNA octamer
reference to entity poly seq: 1,DG,1
reference to struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 1
pdbx poly seq scheme.auth mon id: G
pdbx poly seq scheme.auth seq num: 1
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 1
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 1
pdbx poly seq scheme.pdb strand id: A

http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
referenced by pdbx poly seq scheme: A,1,DG,1
referenced by pdbx poly seq scheme: A,1,UMS,2
referenced by pdbx poly seq scheme: A,1,DG,3
referenced by pdbx poly seq scheme: A,1,US2,4
referenced by pdbx poly seq scheme: A,1,DA,5
referenced by pdbx poly seq scheme: A,1,DC,6
referenced by pdbx poly seq scheme: A,1,DA,7
referenced by pdbx poly seq scheme: A,1,DC,8
type: struct asym
of datablock: 5-SMe-dU containing DNA octamer
reference to entity: http://rdf.wwpdb.org/pdb/3IKI/entity/1
struct asym.id: A
struct asym.entity id: 1
struct asym.pdbx blank PDB chainid flag: N
struct asym.pdbx modified: N

A,1,UMS,2
type: pdbx poly seq scheme
of datablock: 5-SMe-dU containing DNA octamer
reference to entity poly seq: 1,UMS,2
reference to struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: UMS
pdbx poly seq scheme.seq id: 2
pdbx poly seq scheme.auth mon id: UMS
pdbx poly seq scheme.auth seq num: 2
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 2
pdbx poly seq scheme.pdb mon id: UMS
pdbx poly seq scheme.pdb seq num: 2
pdbx poly seq scheme.pdb strand id: A

A,1,DG,3
type: pdbx poly seq scheme
of datablock: 5-SMe-dU containing DNA octamer
reference to entity poly seq: 1,DG,3
reference to struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 3
pdbx poly seq scheme.auth mon id: G
pdbx poly seq scheme.auth seq num: 3
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 3
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 3
pdbx poly seq scheme.pdb strand id: A

A,1,US2,4
type: pdbx poly seq scheme
of datablock: 5-SMe-dU containing DNA octamer
reference to entity poly seq: 1,US2,4
reference to struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: US2
pdbx poly seq scheme.seq id: 4
pdbx poly seq scheme.auth mon id: USM
pdbx poly seq scheme.auth seq num: 4
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 4
pdbx poly seq scheme.pdb mon id: US2
pdbx poly seq scheme.pdb seq num: 4
pdbx poly seq scheme.pdb strand id: A

A,1,DA,5
type: pdbx poly seq scheme
of datablock: 5-SMe-dU containing DNA octamer
reference to entity poly seq: 1,DA,5
reference to struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DA
pdbx poly seq scheme.seq id: 5
pdbx poly seq scheme.auth mon id: A
pdbx poly seq scheme.auth seq num: 5
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 5
pdbx poly seq scheme.pdb mon id: DA
pdbx poly seq scheme.pdb seq num: 5
pdbx poly seq scheme.pdb strand id: A

A,1,DC,6
type: pdbx poly seq scheme
of datablock: 5-SMe-dU containing DNA octamer
reference to entity poly seq: 1,DC,6
reference to struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DC
pdbx poly seq scheme.seq id: 6
pdbx poly seq scheme.auth mon id: C
pdbx poly seq scheme.auth seq num: 6
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 6
pdbx poly seq scheme.pdb mon id: DC
pdbx poly seq scheme.pdb seq num: 6
pdbx poly seq scheme.pdb strand id: A

A,1,DA,7
type: pdbx poly seq scheme
of datablock: 5-SMe-dU containing DNA octamer
reference to entity poly seq: 1,DA,7
reference to struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DA
pdbx poly seq scheme.seq id: 7
pdbx poly seq scheme.auth mon id: A
pdbx poly seq scheme.auth seq num: 7
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 7
pdbx poly seq scheme.pdb mon id: DA
pdbx poly seq scheme.pdb seq num: 7
pdbx poly seq scheme.pdb strand id: A

A,1,DC,8
type: pdbx poly seq scheme
of datablock: 5-SMe-dU containing DNA octamer
reference to entity poly seq: 1,DC,8
reference to struct asym: http://rdf.wwpdb.org/pdb/3IKI/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DC
pdbx poly seq scheme.seq id: 8
pdbx poly seq scheme.auth mon id: C
pdbx poly seq scheme.auth seq num: 8
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 8
pdbx poly seq scheme.pdb mon id: DC
pdbx poly seq scheme.pdb seq num: 8
pdbx poly seq scheme.pdb strand id: A

http://rdf.wwpdb.org/pdb/3IKI/pdbx_refine_tls/1
type: pdbx refine tls
of datablock: 5-SMe-dU containing DNA octamer
pdbx refine tls.id: 1
pdbx refine tls.l11: 0.1824
pdbx refine tls.l12: -0.3805
pdbx refine tls.l13: -0.0034
pdbx refine tls.l22: 1.305
pdbx refine tls.l23: 0.2072
pdbx refine tls.l33: 0.2928
pdbx refine tls.s11: -0.0049
pdbx refine tls.s12: 0.0122
pdbx refine tls.s13: 0.0094
pdbx refine tls.s21: 0.1295
pdbx refine tls.s22: 0.0189
pdbx refine tls.s23: -0.0139
pdbx refine tls.s31: 0.0248
pdbx refine tls.s32: -0.0403
pdbx refine tls.s33: -0.014
pdbx refine tls.t11: 0.0169
pdbx refine tls.t12: -0.0065
pdbx refine tls.t13: 0.0054
pdbx refine tls.t22: -0.0057
pdbx refine tls.t23: -0.0025
pdbx refine tls.t33: 0.0077
pdbx refine tls.method: refined
pdbx refine tls.origin x: 31.5133
pdbx refine tls.origin y: 30.4882
pdbx refine tls.origin z: 2.3842
pdbx refine tls.pdbx refine id: X-RAY DIFFRACTION
referenced by pdbx refine tls group: http://rdf.wwpdb.org/pdb/3IKI/pdbx_refine_tls_group/1

http://rdf.wwpdb.org/pdb/3IKI/pdbx_refine_tls_group/1
type: pdbx refine tls group
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx refine tls: http://rdf.wwpdb.org/pdb/3IKI/pdbx_refine_tls/1
pdbx refine tls group.id: 1
pdbx refine tls group.beg auth asym id: A
pdbx refine tls group.beg auth seq id: 1
pdbx refine tls group.end auth asym id: A
pdbx refine tls group.end auth seq id: 8
pdbx refine tls group.pdbx refine id: X-RAY DIFFRACTION
pdbx refine tls group.refine tls id: 1

http://rdf.wwpdb.org/pdb/3IKI/pdbx_struct_assembly/1
type: pdbx struct assembly
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct assembly.id: 1
pdbx struct assembly.details: author_and_software_defined_assembly
pdbx struct assembly.method details: PISA
pdbx struct assembly.oligomeric count: 2
pdbx struct assembly.oligomeric details: dimeric
referenced by pdbx struct assembly gen: 1,A,B,C,1,2

1,A,B,C,1,2
type: pdbx struct assembly gen
of datablock: 5-SMe-dU containing DNA octamer
reference to pdbx struct assembly: http://rdf.wwpdb.org/pdb/3IKI/pdbx_struct_assembly/1
pdbx struct assembly gen.assembly id: 1
pdbx struct assembly gen.asym id list: A,B,C
pdbx struct assembly gen.oper expression: 1,2

1,ABSA (A^2)
type: pdbx struct assembly prop
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct assembly prop.biol id: 1
pdbx struct assembly prop.type: ABSA (A^2)
pdbx struct assembly prop.value: 2240

1,MORE
type: pdbx struct assembly prop
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct assembly prop.biol id: 1
pdbx struct assembly prop.type: MORE
pdbx struct assembly prop.value: -12

1,SSA (A^2)
type: pdbx struct assembly prop
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct assembly prop.biol id: 1
pdbx struct assembly prop.type: SSA (A^2)
pdbx struct assembly prop.value: 2810

http://rdf.wwpdb.org/pdb/3IKI/pdbx_struct_conn_angle/1
type: pdbx struct conn angle
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct conn angle.id: 1
pdbx struct conn angle.ptnr1 auth asym id: A
pdbx struct conn angle.ptnr1 auth comp id: DG
pdbx struct conn angle.ptnr1 auth seq id: 3
pdbx struct conn angle.ptnr1 label asym id: A
pdbx struct conn angle.ptnr1 label atom id: OP2
pdbx struct conn angle.ptnr1 label comp id: DG
pdbx struct conn angle.ptnr1 label seq id: 3
pdbx struct conn angle.ptnr1 symmetry: 1_555
pdbx struct conn angle.ptnr2 auth asym id: A
pdbx struct conn angle.ptnr2 auth comp id: MG
pdbx struct conn angle.ptnr2 auth seq id: 11
pdbx struct conn angle.ptnr2 label asym id: B
pdbx struct conn angle.ptnr2 label atom id: MG
pdbx struct conn angle.ptnr2 label comp id: MG
pdbx struct conn angle.ptnr2 symmetry: 1_555
pdbx struct conn angle.ptnr3 auth asym id: A
pdbx struct conn angle.ptnr3 auth comp id: HOH
pdbx struct conn angle.ptnr3 auth seq id: 36
pdbx struct conn angle.ptnr3 label asym id: C
pdbx struct conn angle.ptnr3 label atom id: O
pdbx struct conn angle.ptnr3 label comp id: HOH
pdbx struct conn angle.ptnr3 symmetry: 1_555
pdbx struct conn angle.value: 130.6

http://rdf.wwpdb.org/pdb/3IKI/pdbx_struct_conn_angle/2
type: pdbx struct conn angle
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct conn angle.id: 2
pdbx struct conn angle.ptnr1 auth asym id: A
pdbx struct conn angle.ptnr1 auth comp id: DG
pdbx struct conn angle.ptnr1 auth seq id: 3
pdbx struct conn angle.ptnr1 label asym id: A
pdbx struct conn angle.ptnr1 label atom id: OP2
pdbx struct conn angle.ptnr1 label comp id: DG
pdbx struct conn angle.ptnr1 label seq id: 3
pdbx struct conn angle.ptnr1 symmetry: 1_555
pdbx struct conn angle.ptnr2 auth asym id: A
pdbx struct conn angle.ptnr2 auth comp id: MG
pdbx struct conn angle.ptnr2 auth seq id: 11
pdbx struct conn angle.ptnr2 label asym id: B
pdbx struct conn angle.ptnr2 label atom id: MG
pdbx struct conn angle.ptnr2 label comp id: MG
pdbx struct conn angle.ptnr2 symmetry: 1_555
pdbx struct conn angle.ptnr3 auth asym id: A
pdbx struct conn angle.ptnr3 auth comp id: HOH
pdbx struct conn angle.ptnr3 auth seq id: 45
pdbx struct conn angle.ptnr3 label asym id: C
pdbx struct conn angle.ptnr3 label atom id: O
pdbx struct conn angle.ptnr3 label comp id: HOH
pdbx struct conn angle.ptnr3 symmetry: 1_555
pdbx struct conn angle.value: 99.3

http://rdf.wwpdb.org/pdb/3IKI/pdbx_struct_conn_angle/3
type: pdbx struct conn angle
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct conn angle.id: 3
pdbx struct conn angle.ptnr1 auth asym id: A
pdbx struct conn angle.ptnr1 auth comp id: HOH
pdbx struct conn angle.ptnr1 auth seq id: 36
pdbx struct conn angle.ptnr1 label asym id: C
pdbx struct conn angle.ptnr1 label atom id: O
pdbx struct conn angle.ptnr1 label comp id: HOH
pdbx struct conn angle.ptnr1 symmetry: 1_555
pdbx struct conn angle.ptnr2 auth asym id: A
pdbx struct conn angle.ptnr2 auth comp id: MG
pdbx struct conn angle.ptnr2 auth seq id: 11
pdbx struct conn angle.ptnr2 label asym id: B
pdbx struct conn angle.ptnr2 label atom id: MG
pdbx struct conn angle.ptnr2 label comp id: MG
pdbx struct conn angle.ptnr2 symmetry: 1_555
pdbx struct conn angle.ptnr3 auth asym id: A
pdbx struct conn angle.ptnr3 auth comp id: HOH
pdbx struct conn angle.ptnr3 auth seq id: 45
pdbx struct conn angle.ptnr3 label asym id: C
pdbx struct conn angle.ptnr3 label atom id: O
pdbx struct conn angle.ptnr3 label comp id: HOH
pdbx struct conn angle.ptnr3 symmetry: 1_555
pdbx struct conn angle.value: 102.8

http://rdf.wwpdb.org/pdb/3IKI/pdbx_struct_mod_residue/1
type: pdbx struct mod residue
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct mod residue.id: 1
pdbx struct mod residue.auth asym id: A
pdbx struct mod residue.auth comp id: UMS
pdbx struct mod residue.auth seq id: 2
pdbx struct mod residue.label asym id: A
pdbx struct mod residue.label comp id: UMS
pdbx struct mod residue.label seq id: 2
pdbx struct mod residue.parent comp id: DU

http://rdf.wwpdb.org/pdb/3IKI/pdbx_struct_mod_residue/2
type: pdbx struct mod residue
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct mod residue.id: 2
pdbx struct mod residue.auth asym id: A
pdbx struct mod residue.auth comp id: US2
pdbx struct mod residue.auth seq id: 4
pdbx struct mod residue.label asym id: A
pdbx struct mod residue.label comp id: US2
pdbx struct mod residue.label seq id: 4
pdbx struct mod residue.parent comp id: DU

http://rdf.wwpdb.org/pdb/3IKI/pdbx_struct_oper_list/1
type: pdbx struct oper list
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct oper list.id: 1
pdbx struct oper list.matrix11: 1
pdbx struct oper list.matrix12: 0
pdbx struct oper list.matrix13: 0
pdbx struct oper list.matrix21: 0
pdbx struct oper list.matrix22: 1
pdbx struct oper list.matrix23: 0
pdbx struct oper list.matrix31: 0
pdbx struct oper list.matrix32: 0
pdbx struct oper list.matrix33: 1
pdbx struct oper list.name: 1_555
pdbx struct oper list.symmetry operation: x,y,z
pdbx struct oper list.type: identity operation
pdbx struct oper list.vector1: 0
pdbx struct oper list.vector2: 0
pdbx struct oper list.vector3: 0

http://rdf.wwpdb.org/pdb/3IKI/pdbx_struct_oper_list/2
type: pdbx struct oper list
of datablock: 5-SMe-dU containing DNA octamer
pdbx struct oper list.id: 2
pdbx struct oper list.matrix11: 0
pdbx struct oper list.matrix12: 1
pdbx struct oper list.matrix13: 0
pdbx struct oper list.matrix21: 1
pdbx struct oper list.matrix22: 0
pdbx struct oper list.matrix23: 0
pdbx struct oper list.matrix31: 0
pdbx struct oper list.matrix32: 0
pdbx struct oper list.matrix33: -1
pdbx struct oper list.name: 7_555
pdbx struct oper list.symmetry operation: y,x,-z
pdbx struct oper list.type: crystal symmetry operation
pdbx struct oper list.vector1: 0
pdbx struct oper list.vector2: 0
pdbx struct oper list.vector3: 0

http://rdf.wwpdb.org/pdb/3IKI/pdbx_validate_rmsd_angle/1
type: pdbx validate rmsd angle
of datablock: 5-SMe-dU containing DNA octamer
pdbx validate rmsd angle.id: 1
pdbx validate rmsd angle.pdb model num: 1
pdbx validate rmsd angle.angle deviation: 2.05
pdbx validate rmsd angle.angle standard deviation: 0.3
pdbx validate rmsd angle.angle target value: 108.3
pdbx validate rmsd angle.angle value: 110.35
pdbx validate rmsd angle.auth asym id 1: A
pdbx validate rmsd angle.auth asym id 2: A
pdbx validate rmsd angle.auth asym id 3: A
pdbx validate rmsd angle.auth atom id 1: O4'
pdbx validate rmsd angle.auth atom id 2: C1'
pdbx validate rmsd angle.auth atom id 3: N1
pdbx validate rmsd angle.auth comp id 1: DC
pdbx validate rmsd angle.auth comp id 2: DC
pdbx validate rmsd angle.auth comp id 3: DC
pdbx validate rmsd angle.auth seq id 1: 8
pdbx validate rmsd angle.auth seq id 2: 8
pdbx validate rmsd angle.auth seq id 3: 8
pdbx validate rmsd angle.linker flag: N

3IKI,X-RAY DIFFRACTION
type: refine
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
refine.entry id: 3IKI
refine.pdbx refine id: X-RAY DIFFRACTION
refine.b iso mean: 12.133
refine.aniso B11: 0.12
refine.aniso B12: 0
refine.aniso B13: 0
refine.aniso B22: 0.12
refine.aniso B23: 0
refine.aniso B33: -0.24
refine.correlation coeff fo to fc: 0.957
refine.correlation coeff fo to fc free: 0.961
refine.details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
refine.ls r factor r free: 0.19414
refine.ls r factor r work: 0.17838
refine.ls r factor all: 0.17907
refine.ls d res high: 1.38
refine.ls d res low: 30.32
refine.ls number reflns r free: 216
refine.ls number reflns all: 4650
refine.ls number reflns obs: 4373
refine.ls percent reflns r free: 4.7
refine.ls percent reflns obs: 94.04
refine.overall SU b: 1.592
refine.overall SU ML: 0.031
refine.pdbx r free selection details: RANDOM
refine.pdbx TLS residual ADP flag: LIKELY RESIDUAL
refine.pdbx diffrn id: 1
refine.pdbx ls cross valid method: THROUGHOUT
refine.pdbx method to determine struct: MOLECULAR REPLACEMENT
refine.pdbx overall ESU r: 0.061
refine.pdbx overall ESU r free: 0.06
refine.pdbx solvent ion probe radii: 0.8
refine.pdbx solvent shrinkage radii: 0.8
refine.pdbx solvent vdw probe radii: 1.2
refine.pdbx starting model: 1DNS
refine.pdbx stereochemistry target values: MAXIMUM LIKELIHOOD
refine.solvent model details: MASK

3IKI,X-RAY DIFFRACTION
type: refine analyze
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
refine analyze.entry id: 3IKI
refine analyze.pdbx refine id: X-RAY DIFFRACTION
refine analyze.luzzati coordinate error free: 0.06
refine analyze.luzzati coordinate error obs: 0.061

LAST,X-RAY DIFFRACTION
type: refine hist
of datablock: 5-SMe-dU containing DNA octamer
refine hist.cycle id: LAST
refine hist.pdbx refine id: X-RAY DIFFRACTION
refine hist.d res high: 1.38
refine hist.d res low: 30.32
refine hist.number atoms solvent: 38
refine hist.number atoms total: 202
refine hist.pdbx number atoms ligand: 1
refine hist.pdbx number atoms nucleic acid: 163
refine hist.pdbx number atoms protein: 0

X-RAY DIFFRACTION,r bond refined d
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_bond_refined_d
refine ls restr.dev ideal: 0.007
refine ls restr.dev ideal target: 0.021
refine ls restr.number: 180

X-RAY DIFFRACTION,r angle refined deg
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_angle_refined_deg
refine ls restr.dev ideal: 1.467
refine ls restr.dev ideal target: 3
refine ls restr.number: 270

X-RAY DIFFRACTION,r chiral restr
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_chiral_restr
refine ls restr.dev ideal: 0.057
refine ls restr.dev ideal target: 0.2
refine ls restr.number: 31

X-RAY DIFFRACTION,r gen planes refined
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_gen_planes_refined
refine ls restr.dev ideal: 0.007
refine ls restr.dev ideal target: 0.02
refine ls restr.number: 83

X-RAY DIFFRACTION,r nbd refined
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_nbd_refined
refine ls restr.dev ideal: 0.371
refine ls restr.dev ideal target: 0.2
refine ls restr.number: 66

X-RAY DIFFRACTION,r nbtor refined
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_nbtor_refined
refine ls restr.dev ideal: 0.277
refine ls restr.dev ideal target: 0.2
refine ls restr.number: 103

X-RAY DIFFRACTION,r xyhbond nbd refined
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_xyhbond_nbd_refined
refine ls restr.dev ideal: 0.102
refine ls restr.dev ideal target: 0.2
refine ls restr.number: 29

X-RAY DIFFRACTION,r symmetry vdw refined
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_symmetry_vdw_refined
refine ls restr.dev ideal: 0.18
refine ls restr.dev ideal target: 0.2
refine ls restr.number: 26

X-RAY DIFFRACTION,r symmetry hbond refined
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_symmetry_hbond_refined
refine ls restr.dev ideal: 0.083
refine ls restr.dev ideal target: 0.2
refine ls restr.number: 10

X-RAY DIFFRACTION,r scbond it
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_scbond_it
refine ls restr.dev ideal: 0.825
refine ls restr.dev ideal target: 3
refine ls restr.number: 261

X-RAY DIFFRACTION,r scangle it
type: refine ls restr
of datablock: 5-SMe-dU containing DNA octamer
refine ls restr.pdbx refine id: X-RAY DIFFRACTION
refine ls restr.type: r_scangle_it
refine ls restr.dev ideal: 1.249
refine ls restr.dev ideal target: 4.5
refine ls restr.number: 270

1.38,X-RAY DIFFRACTION
type: refine ls shell
of datablock: 5-SMe-dU containing DNA octamer
refine ls shell.d res high: 1.38
refine ls shell.pdbx refine id: X-RAY DIFFRACTION
refine ls shell.r factor r free: 0.157
refine ls shell.r factor r work: 0.203
refine ls shell.d res low: 1.416
refine ls shell.number reflns r free: 14
refine ls shell.number reflns r work: 216
refine ls shell.pdbx total number of bins used: 20
refine ls shell.percent reflns obs: 65.53

http://rdf.wwpdb.org/pdb/3IKI/reflns/1
type: reflns
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
reflns.pdbx ordinal: 1
reflns.d resolution high: 1.38
reflns.d resolution low: 50
reflns.entry id: 3IKI
reflns.number all: 4911
reflns.number obs: 4616
reflns.pdbx rmerge i obs: 0.057
reflns.pdbx diffrn id: 1
reflns.pdbx net i over sigma i: 23.02
reflns.pdbx redundancy: 8.4
reflns.percent possible obs: 94

http://rdf.wwpdb.org/pdb/3IKI/reflns_shell/1
type: reflns shell
of datablock: 5-SMe-dU containing DNA octamer
reflns shell.pdbx ordinal: 1
reflns shell.rmerge i obs: 0.245
reflns shell.d res high: 1.38
reflns shell.d res low: 1.43
reflns shell.mean i over sig i obs: 5.86
reflns shell.number unique all: 324
reflns shell.pdbx diffrn id: 1
reflns shell.pdbx redundancy: 5.2
reflns shell.percent possible all: 67.8

http://rdf.wwpdb.org/pdb/3IKI/software/1
type: software
of datablock: 5-SMe-dU containing DNA octamer
software.pdbx ordinal: 1
software.classification: data collection
software.name: CBASS

http://rdf.wwpdb.org/pdb/3IKI/software/2
type: software
of datablock: 5-SMe-dU containing DNA octamer
software.pdbx ordinal: 2
software.classification: phasing
software.name: PHASES

http://rdf.wwpdb.org/pdb/3IKI/software/3
type: software
of datablock: 5-SMe-dU containing DNA octamer
software.pdbx ordinal: 3
software.classification: refinement
software.name: REFMAC
software.version: 5.2.0019

http://rdf.wwpdb.org/pdb/3IKI/software/4
type: software
of datablock: 5-SMe-dU containing DNA octamer
software.pdbx ordinal: 4
software.classification: data reduction
software.name: HKL-2000

http://rdf.wwpdb.org/pdb/3IKI/software/5
type: software
of datablock: 5-SMe-dU containing DNA octamer
software.pdbx ordinal: 5
software.classification: data scaling
software.name: HKL-2000

3IKI
type: struct
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
struct.entry id: 3IKI
struct.title: 5-SMe-dU containing DNA octamer

http://rdf.wwpdb.org/pdb/3IKI/struct_asym/B
type: struct asym
of datablock: 5-SMe-dU containing DNA octamer
reference to entity: http://rdf.wwpdb.org/pdb/3IKI/entity/2
struct asym.id: B
struct asym.entity id: 2
struct asym.pdbx blank PDB chainid flag: N
struct asym.pdbx modified: N

http://rdf.wwpdb.org/pdb/3IKI/struct_asym/C
type: struct asym
of datablock: 5-SMe-dU containing DNA octamer
reference to entity: http://rdf.wwpdb.org/pdb/3IKI/entity/3
struct asym.id: C
struct asym.entity id: 3
struct asym.pdbx blank PDB chainid flag: N
struct asym.pdbx modified: N

http://rdf.wwpdb.org/pdb/3IKI/struct_biol/1
type: struct biol
of datablock: 5-SMe-dU containing DNA octamer
struct biol.id: 1

covale1
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: covale
struct conn.id: covale1
struct conn.conn type id: covale
struct conn.pdbx dist value: 1.601
struct conn.pdbx leaving atom flag: both
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 1
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O3'
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 1
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: UMS
struct conn.ptnr2 auth seq id: 2
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: P
struct conn.ptnr2 label comp id: UMS
struct conn.ptnr2 label seq id: 2
struct conn.ptnr2 symmetry: 1_555

covale
referenced by struct conn: covale1
referenced by struct conn: covale2
referenced by struct conn: covale3
referenced by struct conn: covale4
type: struct conn type
of datablock: 5-SMe-dU containing DNA octamer
struct conn type.id: covale

covale2
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: covale
struct conn.id: covale2
struct conn.conn type id: covale
struct conn.pdbx dist value: 1.599
struct conn.pdbx leaving atom flag: both
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: UMS
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O3'
struct conn.ptnr1 label comp id: UMS
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 3
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: P
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 3
struct conn.ptnr2 symmetry: 1_555

covale3
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: covale
struct conn.id: covale3
struct conn.conn type id: covale
struct conn.pdbx dist value: 1.596
struct conn.pdbx leaving atom flag: both
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 3
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O3'
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 3
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: US2
struct conn.ptnr2 auth seq id: 4
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: P
struct conn.ptnr2 label comp id: US2
struct conn.ptnr2 label seq id: 4
struct conn.ptnr2 symmetry: 1_555

covale4
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: covale
struct conn.id: covale4
struct conn.conn type id: covale
struct conn.pdbx dist value: 1.597
struct conn.pdbx leaving atom flag: both
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: US2
struct conn.ptnr1 auth seq id: 4
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O3'
struct conn.ptnr1 label comp id: US2
struct conn.ptnr1 label seq id: 4
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DA
struct conn.ptnr2 auth seq id: 5
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: P
struct conn.ptnr2 label comp id: DA
struct conn.ptnr2 label seq id: 5
struct conn.ptnr2 symmetry: 1_555

metalc1
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: metalc
struct conn.id: metalc1
struct conn.conn type id: metalc
struct conn.pdbx dist value: 2.123
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 3
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: OP2
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 3
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: MG
struct conn.ptnr2 auth seq id: 11
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: MG
struct conn.ptnr2 label comp id: MG
struct conn.ptnr2 symmetry: 1_555

metalc
referenced by struct conn: metalc1
referenced by struct conn: metalc2
referenced by struct conn: metalc3
type: struct conn type
of datablock: 5-SMe-dU containing DNA octamer
struct conn type.id: metalc

metalc2
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: metalc
struct conn.id: metalc2
struct conn.conn type id: metalc
struct conn.pdbx dist value: 2.612
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: MG
struct conn.ptnr1 auth seq id: 11
struct conn.ptnr1 label asym id: B
struct conn.ptnr1 label atom id: MG
struct conn.ptnr1 label comp id: MG
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: HOH
struct conn.ptnr2 auth seq id: 36
struct conn.ptnr2 label asym id: C
struct conn.ptnr2 label atom id: O
struct conn.ptnr2 label comp id: HOH
struct conn.ptnr2 symmetry: 1_555

metalc3
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: metalc
struct conn.id: metalc3
struct conn.conn type id: metalc
struct conn.pdbx dist value: 2.68
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: MG
struct conn.ptnr1 auth seq id: 11
struct conn.ptnr1 label asym id: B
struct conn.ptnr1 label atom id: MG
struct conn.ptnr1 label comp id: MG
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: HOH
struct conn.ptnr2 auth seq id: 45
struct conn.ptnr2 label asym id: C
struct conn.ptnr2 label atom id: O
struct conn.ptnr2 label comp id: HOH
struct conn.ptnr2 symmetry: 1_555

hydrog1
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog1
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 1
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N1
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 1
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 8
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N3
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 8
struct conn.ptnr2 symmetry: 7_555

hydrog
referenced by struct conn: hydrog1
referenced by struct conn: hydrog2
referenced by struct conn: hydrog3
referenced by struct conn: hydrog4
referenced by struct conn: hydrog5
referenced by struct conn: hydrog6
referenced by struct conn: hydrog7
referenced by struct conn: hydrog8
referenced by struct conn: hydrog9
referenced by struct conn: hydrog10
referenced by struct conn: hydrog11
referenced by struct conn: hydrog12
referenced by struct conn: hydrog13
referenced by struct conn: hydrog14
referenced by struct conn: hydrog15
referenced by struct conn: hydrog16
type: struct conn type
of datablock: 5-SMe-dU containing DNA octamer
struct conn type.id: hydrog

hydrog2
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog2
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 1
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N2
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 1
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 8
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: O2
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 8
struct conn.ptnr2 symmetry: 7_555

hydrog3
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog3
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 1
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O6
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 1
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 8
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N4
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 8
struct conn.ptnr2 symmetry: 7_555

hydrog4
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog4
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: UMS
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N3
struct conn.ptnr1 label comp id: UMS
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DA
struct conn.ptnr2 auth seq id: 7
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N1
struct conn.ptnr2 label comp id: DA
struct conn.ptnr2 label seq id: 7
struct conn.ptnr2 symmetry: 7_555

hydrog5
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog5
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: UMS
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O4
struct conn.ptnr1 label comp id: UMS
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DA
struct conn.ptnr2 auth seq id: 7
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N6
struct conn.ptnr2 label comp id: DA
struct conn.ptnr2 label seq id: 7
struct conn.ptnr2 symmetry: 7_555

hydrog6
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog6
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 3
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N1
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 3
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 6
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N3
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 6
struct conn.ptnr2 symmetry: 7_555

hydrog7
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog7
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 3
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N2
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 3
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 6
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: O2
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 6
struct conn.ptnr2 symmetry: 7_555

hydrog8
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog8
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 3
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O6
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 3
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 6
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N4
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 6
struct conn.ptnr2 symmetry: 7_555

hydrog9
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog9
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 6
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N3
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 6
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 3
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N1
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 3
struct conn.ptnr2 symmetry: 7_555

hydrog10
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog10
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 6
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N4
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 6
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 3
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: O6
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 3
struct conn.ptnr2 symmetry: 7_555

hydrog11
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog11
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 6
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O2
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 6
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 3
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N2
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 3
struct conn.ptnr2 symmetry: 7_555

hydrog12
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog12
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DA
struct conn.ptnr1 auth seq id: 7
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N1
struct conn.ptnr1 label comp id: DA
struct conn.ptnr1 label seq id: 7
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: UMS
struct conn.ptnr2 auth seq id: 2
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N3
struct conn.ptnr2 label comp id: UMS
struct conn.ptnr2 label seq id: 2
struct conn.ptnr2 symmetry: 7_555

hydrog13
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog13
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DA
struct conn.ptnr1 auth seq id: 7
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N6
struct conn.ptnr1 label comp id: DA
struct conn.ptnr1 label seq id: 7
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: UMS
struct conn.ptnr2 auth seq id: 2
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: O4
struct conn.ptnr2 label comp id: UMS
struct conn.ptnr2 label seq id: 2
struct conn.ptnr2 symmetry: 7_555

hydrog14
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog14
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 8
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N3
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 8
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 1
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N1
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 1
struct conn.ptnr2 symmetry: 7_555

hydrog15
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog15
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 8
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N4
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 8
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 1
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: O6
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 1
struct conn.ptnr2 symmetry: 7_555

hydrog16
type: struct conn
of datablock: 5-SMe-dU containing DNA octamer
reference to struct conn type: hydrog
struct conn.id: hydrog16
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 8
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O2
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 8
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 1
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N2
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 1
struct conn.ptnr2 symmetry: 7_555

3IKI
type: struct keywords
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
struct keywords.entry id: 3IKI
struct keywords.pdbx keywords: DNA
struct keywords.text: Selenium, Nucleic Acid, 5-SMe-deoxyuridine, 2'-SeMe-deoxyuridine, DNA

http://rdf.wwpdb.org/pdb/3IKI/struct_ref/1
type: struct ref
of datablock: 5-SMe-dU containing DNA octamer
reference to entity: http://rdf.wwpdb.org/pdb/3IKI/entity/1
struct ref.id: 1
struct ref.db code: 3IKI
struct ref.db name: PDB
struct ref.entity id: 1
struct ref.pdbx db accession: 3IKI
struct ref.pdbx seq one letter code: GUGUACAC
referenced by struct ref seq: http://rdf.wwpdb.org/pdb/3IKI/struct_ref_seq/1

http://rdf.wwpdb.org/pdb/3IKI/struct_ref_seq/1
type: struct ref seq
of datablock: 5-SMe-dU containing DNA octamer
reference to struct ref: http://rdf.wwpdb.org/pdb/3IKI/struct_ref/1
struct ref seq.align id: 1
struct ref seq.db align beg: 1
struct ref seq.db align end: 8
struct ref seq.pdbx PDB id code: 3IKI
struct ref seq.pdbx auth seq align beg: 1
struct ref seq.pdbx auth seq align end: 8
struct ref seq.pdbx db accession: 3IKI
struct ref seq.pdbx strand id: A
struct ref seq.ref id: 1
struct ref seq.seq align beg: 1
struct ref seq.seq align end: 8

AC1
type: struct site
of datablock: 5-SMe-dU containing DNA octamer
struct site.id: AC1
struct site.details: BINDING SITE FOR RESIDUE MG A 11
struct site.pdbx auth asym id: A
struct site.pdbx auth comp id: MG
struct site.pdbx auth seq id: 11
struct site.pdbx evidence code: Software
struct site.pdbx num residues: 4
referenced by struct site gen: 4,AC1
referenced by struct site gen: 1,AC1
referenced by struct site gen: 2,AC1
referenced by struct site gen: 3,AC1

1,AC1
type: struct site gen
of datablock: 5-SMe-dU containing DNA octamer
reference to struct site: AC1
struct site gen.id: 1
struct site gen.site id: AC1
struct site gen.auth asym id: A
struct site gen.auth comp id: UMS
struct site gen.auth seq id: 2
struct site gen.label asym id: A
struct site gen.label comp id: UMS
struct site gen.label seq id: 2
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

2,AC1
type: struct site gen
of datablock: 5-SMe-dU containing DNA octamer
reference to struct site: AC1
struct site gen.id: 2
struct site gen.site id: AC1
struct site gen.auth asym id: A
struct site gen.auth comp id: DG
struct site gen.auth seq id: 3
struct site gen.label asym id: A
struct site gen.label comp id: DG
struct site gen.label seq id: 3
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

3,AC1
type: struct site gen
of datablock: 5-SMe-dU containing DNA octamer
reference to struct site: AC1
struct site gen.id: 3
struct site gen.site id: AC1
struct site gen.auth asym id: A
struct site gen.auth comp id: HOH
struct site gen.auth seq id: 36
struct site gen.label asym id: C
struct site gen.label comp id: HOH
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

4,AC1
type: struct site gen
of datablock: 5-SMe-dU containing DNA octamer
reference to struct site: AC1
struct site gen.id: 4
struct site gen.site id: AC1
struct site gen.auth asym id: A
struct site gen.auth comp id: HOH
struct site gen.auth seq id: 45
struct site gen.label asym id: C
struct site gen.label comp id: HOH
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

3IKI
type: symmetry
of datablock: 5-SMe-dU containing DNA octamer
reference to entry: 3IKI
symmetry.entry id: 3IKI
symmetry.int tables number: 96
symmetry.space group name H-M: P 43 21 2