High Fidelity Base Pairing at the 3'-Terminus
type: datablock
alternative label: 2KK5
link to mmcif: 2KK5.cif.gz
link to pdbml: 2KK5.xml.gz
link to pdbml noatom: 2KK5-noatom.xml.gz
link to pdbml extatom: 2KK5-extatom.xml.gz
link to doi: doi:10.2210/pdb2KK5/pdb
datablock name: 2KK5-noatom
has atom sites category: atom sitesCategory
has atom type category: atom typeCategory
has audit author category: audit authorCategory
has audit conform category: audit conformCategory
has chem comp category: chem compCategory
has citation category: citationCategory
has citation author category: citation authorCategory
has database 2 category: database 2Category
has entity category: entityCategory
has entity poly category: entity polyCategory
has entity poly seq category: entity poly seqCategory
has entry category: entryCategory
has exptl category: exptlCategory
has ndb struct conf na category: ndb struct conf naCategory
has ndb struct na base pair category: ndb struct na base pairCategory
has ndb struct na base pair step category: ndb struct na base pair stepCategory
has pdbx audit revision category category: pdbx audit revision categoryCategory
has pdbx audit revision details category: pdbx audit revision detailsCategory
has pdbx audit revision group category: pdbx audit revision groupCategory
has pdbx audit revision history category: pdbx audit revision historyCategory
has pdbx audit revision item category: pdbx audit revision itemCategory
has pdbx database status category: pdbx database statusCategory
has pdbx entity nonpoly category: pdbx entity nonpolyCategory
has pdbx nmr ensemble category: pdbx nmr ensembleCategory
has pdbx nmr exptl category: pdbx nmr exptlCategory
has pdbx nmr exptl sample category: pdbx nmr exptl sampleCategory
has pdbx nmr exptl sample conditions category: pdbx nmr exptl sample conditionsCategory
has pdbx nmr refine category: pdbx nmr refineCategory
has pdbx nmr representative category: pdbx nmr representativeCategory
has pdbx nmr sample details category: pdbx nmr sample detailsCategory
has pdbx nmr software category: pdbx nmr softwareCategory
has pdbx nmr spectrometer category: pdbx nmr spectrometerCategory
has pdbx nonpoly scheme category: pdbx nonpoly schemeCategory
has pdbx poly seq scheme category: pdbx poly seq schemeCategory
has pdbx struct assembly category: pdbx struct assemblyCategory
has pdbx struct assembly gen category: pdbx struct assembly genCategory
has pdbx struct mod residue category: pdbx struct mod residueCategory
has pdbx struct oper list category: pdbx struct oper listCategory
has struct category: structCategory
has struct asym category: struct asymCategory
has struct biol category: struct biolCategory
has struct conn category: struct connCategory
has struct conn type category: struct conn typeCategory
has struct keywords category: struct keywordsCategory
has struct ref category: struct refCategory
has struct ref seq category: struct ref seqCategory
has struct site category: struct siteCategory
has struct site gen category: struct site genCategory
has struct site keywords category: struct site keywordsCategory

2KK5
type: atom sites
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entry: 2KK5
atom sites.entry id: 2KK5
atom sites.fract transf matrix11: 1
atom sites.fract transf matrix12: 0
atom sites.fract transf matrix13: 0
atom sites.fract transf matrix21: 0
atom sites.fract transf matrix22: 1
atom sites.fract transf matrix23: 0
atom sites.fract transf matrix31: 0
atom sites.fract transf matrix32: 0
atom sites.fract transf matrix33: 1
atom sites.fract transf vector1: 0
atom sites.fract transf vector2: 0
atom sites.fract transf vector3: 0

2KK5
referenced by atom sites: 2KK5
type: entry
of datablock: High Fidelity Base Pairing at the 3'-Terminus
entry.id: 2KK5
referenced by exptl: 2KK5,SOLUTION NMR
referenced by struct: 2KK5
referenced by struct keywords: 2KK5
referenced by pdbx database status: 2KK5
referenced by pdbx nmr ensemble: 2KK5
referenced by pdbx nmr representative: 2KK5
referenced by pdbx nmr refine: 2KK5,1
referenced by ndb struct conf na: 2KK5,b-form double helix

http://rdf.wwpdb.org/pdb/2KK5/atom_type/C
type: atom type
of datablock: High Fidelity Base Pairing at the 3'-Terminus
atom type.symbol: C

http://rdf.wwpdb.org/pdb/2KK5/atom_type/H
type: atom type
of datablock: High Fidelity Base Pairing at the 3'-Terminus
atom type.symbol: H

http://rdf.wwpdb.org/pdb/2KK5/atom_type/N
type: atom type
of datablock: High Fidelity Base Pairing at the 3'-Terminus
atom type.symbol: N

http://rdf.wwpdb.org/pdb/2KK5/atom_type/O
type: atom type
of datablock: High Fidelity Base Pairing at the 3'-Terminus
atom type.symbol: O

http://rdf.wwpdb.org/pdb/2KK5/atom_type/P
type: atom type
of datablock: High Fidelity Base Pairing at the 3'-Terminus
atom type.symbol: P

http://rdf.wwpdb.org/pdb/2KK5/audit_author/1
type: audit author
of datablock: High Fidelity Base Pairing at the 3'-Terminus
audit author.pdbx ordinal: 1
audit author.name: Patra, A.

http://rdf.wwpdb.org/pdb/2KK5/audit_author/2
type: audit author
of datablock: High Fidelity Base Pairing at the 3'-Terminus
audit author.pdbx ordinal: 2
audit author.name: Richert, C.

mmcif pdbx.dic,5.356
type: audit conform
of datablock: High Fidelity Base Pairing at the 3'-Terminus
audit conform.dict name: mmcif_pdbx.dic
audit conform.dict version: 5.356
audit conform.dict location: http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic

2AU
type: chem comp
of datablock: High Fidelity Base Pairing at the 3'-Terminus
chem comp.id: 2AU
chem comp.formula: C9 H14 N3 O8 P
chem comp.formula weight: 323.197
chem comp.mon nstd flag: n
chem comp.name: 2'-AMINOURIDINE
chem comp.type: RNA linking
link to chem comp: 2AU
referenced by entity poly seq: 1,2AU,6

AQC
type: chem comp
of datablock: High Fidelity Base Pairing at the 3'-Terminus
chem comp.id: AQC
chem comp.formula: C15 H9 N O3
chem comp.formula weight: 251.237
chem comp.name: 9,10-dioxo-9,10-dihydroanthracene-2-carboxamide
chem comp.type: non-polymer
link to chem comp: AQC

DA
type: chem comp
of datablock: High Fidelity Base Pairing at the 3'-Terminus
chem comp.id: DA
chem comp.formula: C10 H14 N5 O6 P
chem comp.formula weight: 331.222
chem comp.mon nstd flag: y
chem comp.name: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
chem comp.type: DNA linking
link to chem comp: DA
referenced by entity poly seq: 1,DA,1

DC
type: chem comp
of datablock: High Fidelity Base Pairing at the 3'-Terminus
chem comp.id: DC
chem comp.formula: C9 H14 N3 O7 P
chem comp.formula weight: 307.197
chem comp.mon nstd flag: y
chem comp.name: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
chem comp.type: DNA linking
link to chem comp: DC
referenced by entity poly seq: 1,DC,4
referenced by entity poly seq: 1,DC,2

DG
type: chem comp
of datablock: High Fidelity Base Pairing at the 3'-Terminus
chem comp.id: DG
chem comp.formula: C10 H14 N5 O7 P
chem comp.formula weight: 347.221
chem comp.mon nstd flag: y
chem comp.name: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
chem comp.type: DNA linking
link to chem comp: DG
referenced by entity poly seq: 1,DG,5
referenced by entity poly seq: 1,DG,3

primary
type: citation
of datablock: High Fidelity Base Pairing at the 3'-Terminus
citation.id: primary
citation.country: US
citation.journal abbrev: J.Am.Chem.Soc.
citation.journal id ASTM: JACSAT
citation.journal id CSD: 0004
citation.journal id ISSN: 0002-7863
citation.journal volume: 131
citation.page first: 12671
citation.page last: 12681
citation.pdbx database id DOI: 10.1021/ja9033654
citation.pdbx database id pub med: 19722718
citation.title: High fidelity base pairing at the 3'-terminus.
citation.year: 2009
link to doi: doi:10.1021/ja9033654
link to pubmed: pubmed:19722718
references: pubmed:19722718
referenced by citation author: primary,Richert, C.,2
referenced by citation author: primary,Patra, A.,1

primary,Patra, A.,1
type: citation author
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to citation: primary
citation author.citation id: primary
citation author.name: Patra, A.
citation author.ordinal: 1

primary,Richert, C.,2
type: citation author
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to citation: primary
citation author.citation id: primary
citation author.name: Richert, C.
citation author.ordinal: 2

2KK5,PDB
type: database 2
of datablock: High Fidelity Base Pairing at the 3'-Terminus
database 2.database code: 2KK5
database 2.database id: PDB
database 2.pdbx DOI: 10.2210/pdb2kk5/pdb
database 2.pdbx database accession: pdb_00002kk5

RCSB101220,RCSB
type: database 2
of datablock: High Fidelity Base Pairing at the 3'-Terminus
database 2.database code: RCSB101220
database 2.database id: RCSB

D 1000101220,WWPDB
type: database 2
of datablock: High Fidelity Base Pairing at the 3'-Terminus
database 2.database code: D_1000101220
database 2.database id: WWPDB

http://rdf.wwpdb.org/pdb/2KK5/entity/1
type: entity
of datablock: High Fidelity Base Pairing at the 3'-Terminus
entity.id: 1
entity.formula weight: 1810.206
entity.pdbx description: 5'-D(*AP*CP*GP*CP*GP*(2AU))-3'
entity.pdbx number of molecules: 2
entity.src method: syn
entity.type: polymer
referenced by entity poly: http://rdf.wwpdb.org/pdb/2KK5/entity_poly/1
referenced by struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/B
referenced by struct ref: http://rdf.wwpdb.org/pdb/2KK5/struct_ref/1
referenced by struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/A

http://rdf.wwpdb.org/pdb/2KK5/entity/2
type: entity
of datablock: High Fidelity Base Pairing at the 3'-Terminus
entity.id: 2
entity.formula weight: 251.237
entity.pdbx description: 9,10-dioxo-9,10-dihydroanthracene-2-carboxamide
entity.pdbx number of molecules: 2
entity.src method: syn
entity.type: non-polymer
referenced by struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/D
referenced by pdbx entity nonpoly: http://rdf.wwpdb.org/pdb/2KK5/pdbx_entity_nonpoly/2
referenced by struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/C

http://rdf.wwpdb.org/pdb/2KK5/entity_poly/1
type: entity poly
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity: http://rdf.wwpdb.org/pdb/2KK5/entity/1
entity poly.entity id: 1
entity poly.nstd linkage: no
entity poly.nstd monomer: yes
entity poly.pdbx seq one letter code: (DA)(DC)(DG)(DC)(DG)(2AU)
entity poly.pdbx seq one letter code can: ACGCGU
entity poly.pdbx strand id: A,B
entity poly.type: polydeoxyribonucleotide
referenced by entity poly seq: 1,2AU,6
referenced by entity poly seq: 1,DA,1
referenced by entity poly seq: 1,DC,2
referenced by entity poly seq: 1,DG,3
referenced by entity poly seq: 1,DC,4
referenced by entity poly seq: 1,DG,5

1,DA,1
type: entity poly seq
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to chem comp: DA
reference to entity poly: http://rdf.wwpdb.org/pdb/2KK5/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DA
entity poly seq.num: 1
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: B,1,DA,1
referenced by pdbx poly seq scheme: A,1,DA,1

1,DC,2
type: entity poly seq
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to chem comp: DC
reference to entity poly: http://rdf.wwpdb.org/pdb/2KK5/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DC
entity poly seq.num: 2
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: B,1,DC,2
referenced by pdbx poly seq scheme: A,1,DC,2

1,DG,3
type: entity poly seq
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/2KK5/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 3
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: B,1,DG,3
referenced by pdbx poly seq scheme: A,1,DG,3

1,DC,4
type: entity poly seq
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to chem comp: DC
reference to entity poly: http://rdf.wwpdb.org/pdb/2KK5/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DC
entity poly seq.num: 4
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: B,1,DC,4
referenced by pdbx poly seq scheme: A,1,DC,4

1,DG,5
type: entity poly seq
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/2KK5/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 5
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: B,1,DG,5
referenced by pdbx poly seq scheme: A,1,DG,5

1,2AU,6
type: entity poly seq
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to chem comp: 2AU
reference to entity poly: http://rdf.wwpdb.org/pdb/2KK5/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: 2AU
entity poly seq.num: 6
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: B,1,2AU,6
referenced by pdbx poly seq scheme: A,1,2AU,6

2KK5,SOLUTION NMR
type: exptl
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entry: 2KK5
exptl.entry id: 2KK5
exptl.method: SOLUTION NMR

2KK5,b-form double helix
type: ndb struct conf na
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entry: 2KK5
ndb struct conf na.entry id: 2KK5
ndb struct conf na.feature: b-form double helix

A,DC,2,1 555,B,DG,5,1 555,1
type: ndb struct na base pair
of datablock: High Fidelity Base Pairing at the 3'-Terminus
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DC
ndb struct na base pair.i label seq id: 2
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: B
ndb struct na base pair.j label comp id: DG
ndb struct na base pair.j label seq id: 5
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -11.014
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 19
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 2
ndb struct na base pair.j auth asym id: B
ndb struct na base pair.j auth seq id: 5
ndb struct na base pair.opening: 0.113
ndb struct na base pair.pair name: A_DC2:DG5_B
ndb struct na base pair.pair number: 1
ndb struct na base pair.propeller: -4.496
ndb struct na base pair.shear: 1.176
ndb struct na base pair.stagger: 0.219
ndb struct na base pair.stretch: -0.363

A,DG,3,1 555,B,DC,4,1 555,1
type: ndb struct na base pair
of datablock: High Fidelity Base Pairing at the 3'-Terminus
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DG
ndb struct na base pair.i label seq id: 3
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: B
ndb struct na base pair.j label comp id: DC
ndb struct na base pair.j label seq id: 4
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -3.727
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 19
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 3
ndb struct na base pair.j auth asym id: B
ndb struct na base pair.j auth seq id: 4
ndb struct na base pair.opening: 0.415
ndb struct na base pair.pair name: A_DG3:DC4_B
ndb struct na base pair.pair number: 2
ndb struct na base pair.propeller: -0.886
ndb struct na base pair.shear: -0.412
ndb struct na base pair.stagger: -0.135
ndb struct na base pair.stretch: -0.233

A,DC,4,1 555,B,DG,3,1 555,1
type: ndb struct na base pair
of datablock: High Fidelity Base Pairing at the 3'-Terminus
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DC
ndb struct na base pair.i label seq id: 4
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: B
ndb struct na base pair.j label comp id: DG
ndb struct na base pair.j label seq id: 3
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: 3.725
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 19
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 4
ndb struct na base pair.j auth asym id: B
ndb struct na base pair.j auth seq id: 3
ndb struct na base pair.opening: 0.412
ndb struct na base pair.pair name: A_DC4:DG3_B
ndb struct na base pair.pair number: 3
ndb struct na base pair.propeller: -0.883
ndb struct na base pair.shear: 0.412
ndb struct na base pair.stagger: -0.134
ndb struct na base pair.stretch: -0.233

A,DG,5,1 555,B,DC,2,1 555,1
type: ndb struct na base pair
of datablock: High Fidelity Base Pairing at the 3'-Terminus
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DG
ndb struct na base pair.i label seq id: 5
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: B
ndb struct na base pair.j label comp id: DC
ndb struct na base pair.j label seq id: 2
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: 10.996
ndb struct na base pair.hbond type 12: 1
ndb struct na base pair.hbond type 28: 19
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 5
ndb struct na base pair.j auth asym id: B
ndb struct na base pair.j auth seq id: 2
ndb struct na base pair.opening: 0.107
ndb struct na base pair.pair name: A_DG5:DC2_B
ndb struct na base pair.pair number: 4
ndb struct na base pair.propeller: -4.482
ndb struct na base pair.shear: -1.176
ndb struct na base pair.stagger: 0.218
ndb struct na base pair.stretch: -0.363

A,A,DC,DG,2,3,1 555,1 555,B,B,DG,DC,5,4,1 555,1 555,1
type: ndb struct na base pair step
of datablock: High Fidelity Base Pairing at the 3'-Terminus
ndb struct na base pair step.i label asym id 1: A
ndb struct na base pair step.i label asym id 2: A
ndb struct na base pair step.i label comp id 1: DC
ndb struct na base pair step.i label comp id 2: DG
ndb struct na base pair step.i label seq id 1: 2
ndb struct na base pair step.i label seq id 2: 3
ndb struct na base pair step.i symmetry 1: 1_555
ndb struct na base pair step.i symmetry 2: 1_555
ndb struct na base pair step.j label asym id 1: B
ndb struct na base pair step.j label asym id 2: B
ndb struct na base pair step.j label comp id 1: DG
ndb struct na base pair step.j label comp id 2: DC
ndb struct na base pair step.j label seq id 1: 5
ndb struct na base pair step.j label seq id 2: 4
ndb struct na base pair step.j symmetry 1: 1_555
ndb struct na base pair step.j symmetry 2: 1_555
ndb struct na base pair step.model number: 1
ndb struct na base pair step.helical rise: 2.926
ndb struct na base pair step.helical twist: 28.532
ndb struct na base pair step.i auth asym id 1: A
ndb struct na base pair step.i auth asym id 2: A
ndb struct na base pair step.i auth seq id 1: 2
ndb struct na base pair step.i auth seq id 2: 3
ndb struct na base pair step.inclination: 35.421
ndb struct na base pair step.j auth asym id 1: B
ndb struct na base pair step.j auth asym id 2: B
ndb struct na base pair step.j auth seq id 1: 5
ndb struct na base pair step.j auth seq id 2: 4
ndb struct na base pair step.rise: 2.962
ndb struct na base pair step.roll: 16.354
ndb struct na base pair step.shift: 0.282
ndb struct na base pair step.slide: 0.85
ndb struct na base pair step.step name: AA_DC2DG3:DC4DG5_BB
ndb struct na base pair step.step number: 1
ndb struct na base pair step.tilt: 4.226
ndb struct na base pair step.tip: -9.152
ndb struct na base pair step.twist: 23.079
ndb struct na base pair step.x displacement: -2.005
ndb struct na base pair step.y displacement: 0.391

A,A,DG,DC,3,4,1 555,1 555,B,B,DC,DG,4,3,1 555,1 555,1
type: ndb struct na base pair step
of datablock: High Fidelity Base Pairing at the 3'-Terminus
ndb struct na base pair step.i label asym id 1: A
ndb struct na base pair step.i label asym id 2: A
ndb struct na base pair step.i label comp id 1: DG
ndb struct na base pair step.i label comp id 2: DC
ndb struct na base pair step.i label seq id 1: 3
ndb struct na base pair step.i label seq id 2: 4
ndb struct na base pair step.i symmetry 1: 1_555
ndb struct na base pair step.i symmetry 2: 1_555
ndb struct na base pair step.j label asym id 1: B
ndb struct na base pair step.j label asym id 2: B
ndb struct na base pair step.j label comp id 1: DC
ndb struct na base pair step.j label comp id 2: DG
ndb struct na base pair step.j label seq id 1: 4
ndb struct na base pair step.j label seq id 2: 3
ndb struct na base pair step.j symmetry 1: 1_555
ndb struct na base pair step.j symmetry 2: 1_555
ndb struct na base pair step.model number: 1
ndb struct na base pair step.helical rise: 3.019
ndb struct na base pair step.helical twist: 45.125
ndb struct na base pair step.i auth asym id 1: A
ndb struct na base pair step.i auth asym id 2: A
ndb struct na base pair step.i auth seq id 1: 3
ndb struct na base pair step.i auth seq id 2: 4
ndb struct na base pair step.inclination: 17.021
ndb struct na base pair step.j auth asym id 1: B
ndb struct na base pair step.j auth asym id 2: B
ndb struct na base pair step.j auth seq id 1: 4
ndb struct na base pair step.j auth seq id 2: 3
ndb struct na base pair step.rise: 2.896
ndb struct na base pair step.roll: 12.897
ndb struct na base pair step.shift: 0
ndb struct na base pair step.slide: 0.855
ndb struct na base pair step.step name: AA_DG3DC4:DG3DC4_BB
ndb struct na base pair step.step number: 2
ndb struct na base pair step.tilt: -0.003
ndb struct na base pair step.tip: 0.004
ndb struct na base pair step.twist: 43.335
ndb struct na base pair step.x displacement: 0.045
ndb struct na base pair step.y displacement: 0

A,A,DC,DG,4,5,1 555,1 555,B,B,DG,DC,3,2,1 555,1 555,1
type: ndb struct na base pair step
of datablock: High Fidelity Base Pairing at the 3'-Terminus
ndb struct na base pair step.i label asym id 1: A
ndb struct na base pair step.i label asym id 2: A
ndb struct na base pair step.i label comp id 1: DC
ndb struct na base pair step.i label comp id 2: DG
ndb struct na base pair step.i label seq id 1: 4
ndb struct na base pair step.i label seq id 2: 5
ndb struct na base pair step.i symmetry 1: 1_555
ndb struct na base pair step.i symmetry 2: 1_555
ndb struct na base pair step.j label asym id 1: B
ndb struct na base pair step.j label asym id 2: B
ndb struct na base pair step.j label comp id 1: DG
ndb struct na base pair step.j label comp id 2: DC
ndb struct na base pair step.j label seq id 1: 3
ndb struct na base pair step.j label seq id 2: 2
ndb struct na base pair step.j symmetry 1: 1_555
ndb struct na base pair step.j symmetry 2: 1_555
ndb struct na base pair step.model number: 1
ndb struct na base pair step.helical rise: 2.927
ndb struct na base pair step.helical twist: 28.528
ndb struct na base pair step.i auth asym id 1: A
ndb struct na base pair step.i auth asym id 2: A
ndb struct na base pair step.i auth seq id 1: 4
ndb struct na base pair step.i auth seq id 2: 5
ndb struct na base pair step.inclination: 35.409
ndb struct na base pair step.j auth asym id 1: B
ndb struct na base pair step.j auth asym id 2: B
ndb struct na base pair step.j auth seq id 1: 3
ndb struct na base pair step.j auth seq id 2: 2
ndb struct na base pair step.rise: 2.963
ndb struct na base pair step.roll: 16.347
ndb struct na base pair step.shift: -0.282
ndb struct na base pair step.slide: 0.85
ndb struct na base pair step.step name: AA_DC4DG5:DC2DG3_BB
ndb struct na base pair step.step number: 3
ndb struct na base pair step.tilt: -4.225
ndb struct na base pair step.tip: 9.152
ndb struct na base pair step.twist: 23.079
ndb struct na base pair step.x displacement: -2.003
ndb struct na base pair step.y displacement: -0.391

Structure model,1,3
type: pdbx audit revision category
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 1
pdbx audit revision category.revision ordinal: 3
pdbx audit revision category.category: database_2

Structure model,3
referenced by pdbx audit revision category: Structure model,1,3
referenced by pdbx audit revision category: Structure model,2,3
referenced by pdbx audit revision category: Structure model,3,3
referenced by pdbx audit revision category: Structure model,4,3
referenced by pdbx audit revision category: Structure model,5,3
referenced by pdbx audit revision category: Structure model,6,3
referenced by pdbx audit revision group: Structure model,2,3
referenced by pdbx audit revision group: Structure model,3,3
referenced by pdbx audit revision group: Structure model,4,3
type: pdbx audit revision history
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx audit revision history.data content type: Structure model
pdbx audit revision history.ordinal: 3
pdbx audit revision history.major revision: 1
pdbx audit revision history.minor revision: 2
pdbx audit revision history.revision date: 2022-03-16
referenced by pdbx audit revision item: Structure model,22,3
referenced by pdbx audit revision item: Structure model,1,3
referenced by pdbx audit revision item: Structure model,2,3
referenced by pdbx audit revision item: Structure model,3,3
referenced by pdbx audit revision item: Structure model,4,3
referenced by pdbx audit revision item: Structure model,5,3
referenced by pdbx audit revision item: Structure model,6,3
referenced by pdbx audit revision item: Structure model,7,3
referenced by pdbx audit revision item: Structure model,8,3
referenced by pdbx audit revision item: Structure model,9,3
referenced by pdbx audit revision item: Structure model,10,3
referenced by pdbx audit revision item: Structure model,11,3
referenced by pdbx audit revision item: Structure model,12,3
referenced by pdbx audit revision item: Structure model,13,3
referenced by pdbx audit revision item: Structure model,14,3
referenced by pdbx audit revision item: Structure model,15,3
referenced by pdbx audit revision item: Structure model,16,3
referenced by pdbx audit revision item: Structure model,17,3
referenced by pdbx audit revision item: Structure model,18,3
referenced by pdbx audit revision item: Structure model,19,3
referenced by pdbx audit revision item: Structure model,20,3
referenced by pdbx audit revision item: Structure model,21,3

Structure model,2,3
type: pdbx audit revision category
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 2
pdbx audit revision category.revision ordinal: 3
pdbx audit revision category.category: pdbx_nmr_spectrometer

Structure model,3,3
type: pdbx audit revision category
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 3
pdbx audit revision category.revision ordinal: 3
pdbx audit revision category.category: pdbx_struct_assembly

Structure model,4,3
type: pdbx audit revision category
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 4
pdbx audit revision category.revision ordinal: 3
pdbx audit revision category.category: pdbx_struct_oper_list

Structure model,5,3
type: pdbx audit revision category
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 5
pdbx audit revision category.revision ordinal: 3
pdbx audit revision category.category: struct_conn

Structure model,6,3
type: pdbx audit revision category
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision category.data content type: Structure model
pdbx audit revision category.ordinal: 6
pdbx audit revision category.revision ordinal: 3
pdbx audit revision category.category: struct_site

Structure model,1,1
type: pdbx audit revision details
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,1
pdbx audit revision details.data content type: Structure model
pdbx audit revision details.ordinal: 1
pdbx audit revision details.revision ordinal: 1
pdbx audit revision details.provider: repository
pdbx audit revision details.type: Initial release

Structure model,1
referenced by pdbx audit revision details: Structure model,1,1
type: pdbx audit revision history
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx audit revision history.data content type: Structure model
pdbx audit revision history.ordinal: 1
pdbx audit revision history.major revision: 1
pdbx audit revision history.minor revision: 0
pdbx audit revision history.revision date: 2009-07-21

Structure model,1,2
type: pdbx audit revision group
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,2
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 1
pdbx audit revision group.revision ordinal: 2
pdbx audit revision group.group: Version format compliance

Structure model,2
referenced by pdbx audit revision group: Structure model,1,2
type: pdbx audit revision history
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx audit revision history.data content type: Structure model
pdbx audit revision history.ordinal: 2
pdbx audit revision history.major revision: 1
pdbx audit revision history.minor revision: 1
pdbx audit revision history.revision date: 2011-07-13

Structure model,2,3
type: pdbx audit revision group
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 2
pdbx audit revision group.revision ordinal: 3
pdbx audit revision group.group: Data collection

Structure model,3,3
type: pdbx audit revision group
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 3
pdbx audit revision group.revision ordinal: 3
pdbx audit revision group.group: Database references

Structure model,4,3
type: pdbx audit revision group
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision group.data content type: Structure model
pdbx audit revision group.ordinal: 4
pdbx audit revision group.revision ordinal: 3
pdbx audit revision group.group: Derived calculations

Structure model,1,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 1
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _database_2.pdbx_DOI

Structure model,2,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 2
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _database_2.pdbx_database_accession

Structure model,3,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 3
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _pdbx_nmr_spectrometer.model

Structure model,4,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 4
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.pdbx_dist_value

Structure model,5,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 5
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.pdbx_leaving_atom_flag

Structure model,6,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 6
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr1_auth_asym_id

Structure model,7,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 7
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr1_auth_comp_id

Structure model,8,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 8
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr1_auth_seq_id

Structure model,9,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 9
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr1_label_asym_id

Structure model,10,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 10
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr1_label_atom_id

Structure model,11,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 11
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr1_label_comp_id

Structure model,12,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 12
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr1_label_seq_id

Structure model,13,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 13
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr2_auth_asym_id

Structure model,14,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 14
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr2_auth_comp_id

Structure model,15,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 15
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr2_auth_seq_id

Structure model,16,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 16
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr2_label_asym_id

Structure model,17,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 17
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr2_label_atom_id

Structure model,18,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 18
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr2_label_comp_id

Structure model,19,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 19
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_conn.ptnr2_label_seq_id

Structure model,20,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 20
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_site.pdbx_auth_asym_id

Structure model,21,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 21
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_site.pdbx_auth_comp_id

Structure model,22,3
type: pdbx audit revision item
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx audit revision history: Structure model,3
pdbx audit revision item.data content type: Structure model
pdbx audit revision item.ordinal: 22
pdbx audit revision item.revision ordinal: 3
pdbx audit revision item.item: _struct_site.pdbx_auth_seq_id

2KK5
type: pdbx database status
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entry: 2KK5
pdbx database status.entry id: 2KK5
pdbx database status.deposit site: BMRB
pdbx database status.pdb format compatible: Y
pdbx database status.process site: RCSB
pdbx database status.recvd initial deposition date: 2009-06-15
pdbx database status.status code: REL
pdbx database status.status code mr: REL

http://rdf.wwpdb.org/pdb/2KK5/pdbx_entity_nonpoly/2
type: pdbx entity nonpoly
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity: http://rdf.wwpdb.org/pdb/2KK5/entity/2
pdbx entity nonpoly.entity id: 2
pdbx entity nonpoly.comp id: AQC
pdbx entity nonpoly.name: 9,10-dioxo-9,10-dihydroanthracene-2-carboxamide

2KK5
type: pdbx nmr ensemble
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entry: 2KK5
pdbx nmr ensemble.entry id: 2KK5
pdbx nmr ensemble.conformer selection criteria: structures with the lowest energy
pdbx nmr ensemble.conformers calculated total number: 80
pdbx nmr ensemble.conformers submitted total number: 3

1,1,1
type: pdbx nmr exptl
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nmr exptl.conditions id: 1
pdbx nmr exptl.experiment id: 1
pdbx nmr exptl.solution id: 1
pdbx nmr exptl.type: 2D 1H-1H NOESY

1,2,1
type: pdbx nmr exptl
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nmr exptl.conditions id: 1
pdbx nmr exptl.experiment id: 2
pdbx nmr exptl.solution id: 1
pdbx nmr exptl.type: 2D 1H-1H TOCSY

1,3,1
type: pdbx nmr exptl
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nmr exptl.conditions id: 1
pdbx nmr exptl.experiment id: 3
pdbx nmr exptl.solution id: 1
pdbx nmr exptl.type: 2D DQF-COSY

Anthraquinon capped DNA duplex-1,1
type: pdbx nmr exptl sample
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nmr exptl sample.component: Anthraquinon capped DNA duplex-1
pdbx nmr exptl sample.solution id: 1
pdbx nmr exptl sample.concentration: 2
pdbx nmr exptl sample.concentration units: mM

http://rdf.wwpdb.org/pdb/2KK5/pdbx_nmr_exptl_sample_conditions/1
type: pdbx nmr exptl sample conditions
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nmr exptl sample conditions.conditions id: 1
pdbx nmr exptl sample conditions.ionic strength: 0.15
pdbx nmr exptl sample conditions.p h: 7
pdbx nmr exptl sample conditions.pressure: ambient
pdbx nmr exptl sample conditions.temperature: 278
pdbx nmr exptl sample conditions.temperature units: K

2KK5,1
type: pdbx nmr refine
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entry: 2KK5
pdbx nmr refine.entry id: 2KK5
pdbx nmr refine.software ordinal: 1
pdbx nmr refine.method: torsion angle dynamics

2KK5
type: pdbx nmr representative
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entry: 2KK5
pdbx nmr representative.entry id: 2KK5
pdbx nmr representative.conformer id: 1
pdbx nmr representative.selection criteria: lowest energy

http://rdf.wwpdb.org/pdb/2KK5/pdbx_nmr_sample_details/1
type: pdbx nmr sample details
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nmr sample details.solution id: 1
pdbx nmr sample details.contents: 2 mM Anthraquinon capped DNA duplex, 100% D2O, 90% H2O/10% D2O
pdbx nmr sample details.solvent system: 100% D2O, 90% H2O/10% D2O

http://rdf.wwpdb.org/pdb/2KK5/pdbx_nmr_software/1
type: pdbx nmr software
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nmr software.ordinal: 1
pdbx nmr software.authors: Brunger, Adams, Clore, Gros, Nilges and Read
pdbx nmr software.classification: structure solution
pdbx nmr software.name: CNS
pdbx nmr software.version: 1.1

http://rdf.wwpdb.org/pdb/2KK5/pdbx_nmr_software/2
type: pdbx nmr software
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nmr software.ordinal: 2
pdbx nmr software.authors: Brunger, Adams, Clore, Gros, Nilges and Read
pdbx nmr software.classification: refinement
pdbx nmr software.name: CNS
pdbx nmr software.version: 1.1

http://rdf.wwpdb.org/pdb/2KK5/pdbx_nmr_spectrometer/1
type: pdbx nmr spectrometer
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nmr spectrometer.spectrometer id: 1
pdbx nmr spectrometer.field strength: 600
pdbx nmr spectrometer.manufacturer: Bruker
pdbx nmr spectrometer.model: AVANCE
pdbx nmr spectrometer.type: Bruker Avance

C,1
type: pdbx nonpoly scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nonpoly scheme.asym id: C
pdbx nonpoly scheme.ndb seq num: 1
pdbx nonpoly scheme.auth mon id: AQC
pdbx nonpoly scheme.auth seq num: 7
pdbx nonpoly scheme.entity id: 2
pdbx nonpoly scheme.mon id: AQC
pdbx nonpoly scheme.pdb mon id: AQC
pdbx nonpoly scheme.pdb seq num: 7
pdbx nonpoly scheme.pdb strand id: A

D,1
type: pdbx nonpoly scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx nonpoly scheme.asym id: D
pdbx nonpoly scheme.ndb seq num: 1
pdbx nonpoly scheme.auth mon id: AQC
pdbx nonpoly scheme.auth seq num: 7
pdbx nonpoly scheme.entity id: 2
pdbx nonpoly scheme.mon id: AQC
pdbx nonpoly scheme.pdb mon id: AQC
pdbx nonpoly scheme.pdb seq num: 7
pdbx nonpoly scheme.pdb strand id: B

A,1,DA,1
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DA,1
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DA
pdbx poly seq scheme.seq id: 1
pdbx poly seq scheme.auth mon id: DA
pdbx poly seq scheme.auth seq num: 1
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 1
pdbx poly seq scheme.pdb mon id: DA
pdbx poly seq scheme.pdb seq num: 1
pdbx poly seq scheme.pdb strand id: A

http://rdf.wwpdb.org/pdb/2KK5/struct_asym/A
referenced by pdbx poly seq scheme: A,1,DA,1
referenced by pdbx poly seq scheme: A,1,DC,2
referenced by pdbx poly seq scheme: A,1,DG,3
referenced by pdbx poly seq scheme: A,1,DC,4
referenced by pdbx poly seq scheme: A,1,DG,5
referenced by pdbx poly seq scheme: A,1,2AU,6
type: struct asym
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity: http://rdf.wwpdb.org/pdb/2KK5/entity/1
struct asym.id: A
struct asym.entity id: 1
struct asym.pdbx blank PDB chainid flag: N
struct asym.pdbx modified: N

A,1,DC,2
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DC,2
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DC
pdbx poly seq scheme.seq id: 2
pdbx poly seq scheme.auth mon id: DC
pdbx poly seq scheme.auth seq num: 2
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 2
pdbx poly seq scheme.pdb mon id: DC
pdbx poly seq scheme.pdb seq num: 2
pdbx poly seq scheme.pdb strand id: A

A,1,DG,3
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DG,3
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 3
pdbx poly seq scheme.auth mon id: DG
pdbx poly seq scheme.auth seq num: 3
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 3
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 3
pdbx poly seq scheme.pdb strand id: A

A,1,DC,4
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DC,4
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DC
pdbx poly seq scheme.seq id: 4
pdbx poly seq scheme.auth mon id: DC
pdbx poly seq scheme.auth seq num: 4
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 4
pdbx poly seq scheme.pdb mon id: DC
pdbx poly seq scheme.pdb seq num: 4
pdbx poly seq scheme.pdb strand id: A

A,1,DG,5
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DG,5
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 5
pdbx poly seq scheme.auth mon id: DG
pdbx poly seq scheme.auth seq num: 5
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 5
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 5
pdbx poly seq scheme.pdb strand id: A

A,1,2AU,6
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,2AU,6
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: 2AU
pdbx poly seq scheme.seq id: 6
pdbx poly seq scheme.auth mon id: 2AU
pdbx poly seq scheme.auth seq num: 6
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 6
pdbx poly seq scheme.pdb mon id: 2AU
pdbx poly seq scheme.pdb seq num: 6
pdbx poly seq scheme.pdb strand id: A

B,1,DA,1
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DA,1
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/B
pdbx poly seq scheme.asym id: B
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DA
pdbx poly seq scheme.seq id: 1
pdbx poly seq scheme.auth mon id: DA
pdbx poly seq scheme.auth seq num: 1
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 1
pdbx poly seq scheme.pdb mon id: DA
pdbx poly seq scheme.pdb seq num: 1
pdbx poly seq scheme.pdb strand id: B

http://rdf.wwpdb.org/pdb/2KK5/struct_asym/B
referenced by pdbx poly seq scheme: B,1,DA,1
referenced by pdbx poly seq scheme: B,1,DC,2
referenced by pdbx poly seq scheme: B,1,DG,3
referenced by pdbx poly seq scheme: B,1,DC,4
referenced by pdbx poly seq scheme: B,1,DG,5
referenced by pdbx poly seq scheme: B,1,2AU,6
type: struct asym
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity: http://rdf.wwpdb.org/pdb/2KK5/entity/1
struct asym.id: B
struct asym.entity id: 1
struct asym.pdbx blank PDB chainid flag: N
struct asym.pdbx modified: N

B,1,DC,2
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DC,2
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/B
pdbx poly seq scheme.asym id: B
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DC
pdbx poly seq scheme.seq id: 2
pdbx poly seq scheme.auth mon id: DC
pdbx poly seq scheme.auth seq num: 2
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 2
pdbx poly seq scheme.pdb mon id: DC
pdbx poly seq scheme.pdb seq num: 2
pdbx poly seq scheme.pdb strand id: B

B,1,DG,3
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DG,3
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/B
pdbx poly seq scheme.asym id: B
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 3
pdbx poly seq scheme.auth mon id: DG
pdbx poly seq scheme.auth seq num: 3
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 3
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 3
pdbx poly seq scheme.pdb strand id: B

B,1,DC,4
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DC,4
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/B
pdbx poly seq scheme.asym id: B
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DC
pdbx poly seq scheme.seq id: 4
pdbx poly seq scheme.auth mon id: DC
pdbx poly seq scheme.auth seq num: 4
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 4
pdbx poly seq scheme.pdb mon id: DC
pdbx poly seq scheme.pdb seq num: 4
pdbx poly seq scheme.pdb strand id: B

B,1,DG,5
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,DG,5
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/B
pdbx poly seq scheme.asym id: B
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 5
pdbx poly seq scheme.auth mon id: DG
pdbx poly seq scheme.auth seq num: 5
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 5
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 5
pdbx poly seq scheme.pdb strand id: B

B,1,2AU,6
type: pdbx poly seq scheme
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity poly seq: 1,2AU,6
reference to struct asym: http://rdf.wwpdb.org/pdb/2KK5/struct_asym/B
pdbx poly seq scheme.asym id: B
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: 2AU
pdbx poly seq scheme.seq id: 6
pdbx poly seq scheme.auth mon id: 2AU
pdbx poly seq scheme.auth seq num: 6
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 6
pdbx poly seq scheme.pdb mon id: 2AU
pdbx poly seq scheme.pdb seq num: 6
pdbx poly seq scheme.pdb strand id: B

http://rdf.wwpdb.org/pdb/2KK5/pdbx_struct_assembly/1
type: pdbx struct assembly
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx struct assembly.id: 1
pdbx struct assembly.details: author_defined_assembly
pdbx struct assembly.oligomeric count: 2
pdbx struct assembly.oligomeric details: dimeric
referenced by pdbx struct assembly gen: 1,A,B,C,D,1

1,A,B,C,D,1
type: pdbx struct assembly gen
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to pdbx struct assembly: http://rdf.wwpdb.org/pdb/2KK5/pdbx_struct_assembly/1
pdbx struct assembly gen.assembly id: 1
pdbx struct assembly gen.asym id list: A,B,C,D
pdbx struct assembly gen.oper expression: 1

http://rdf.wwpdb.org/pdb/2KK5/pdbx_struct_mod_residue/1
type: pdbx struct mod residue
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx struct mod residue.id: 1
pdbx struct mod residue.auth asym id: A
pdbx struct mod residue.auth comp id: 2AU
pdbx struct mod residue.auth seq id: 6
pdbx struct mod residue.details: 2'-AMINOURIDINE
pdbx struct mod residue.label asym id: A
pdbx struct mod residue.label comp id: 2AU
pdbx struct mod residue.label seq id: 6
pdbx struct mod residue.parent comp id: U

http://rdf.wwpdb.org/pdb/2KK5/pdbx_struct_mod_residue/2
type: pdbx struct mod residue
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx struct mod residue.id: 2
pdbx struct mod residue.auth asym id: B
pdbx struct mod residue.auth comp id: 2AU
pdbx struct mod residue.auth seq id: 6
pdbx struct mod residue.details: 2'-AMINOURIDINE
pdbx struct mod residue.label asym id: B
pdbx struct mod residue.label comp id: 2AU
pdbx struct mod residue.label seq id: 6
pdbx struct mod residue.parent comp id: U

http://rdf.wwpdb.org/pdb/2KK5/pdbx_struct_oper_list/1
type: pdbx struct oper list
of datablock: High Fidelity Base Pairing at the 3'-Terminus
pdbx struct oper list.id: 1
pdbx struct oper list.matrix11: 1
pdbx struct oper list.matrix12: 0
pdbx struct oper list.matrix13: 0
pdbx struct oper list.matrix21: 0
pdbx struct oper list.matrix22: 1
pdbx struct oper list.matrix23: 0
pdbx struct oper list.matrix31: 0
pdbx struct oper list.matrix32: 0
pdbx struct oper list.matrix33: 1
pdbx struct oper list.name: 1_555
pdbx struct oper list.symmetry operation: x,y,z
pdbx struct oper list.type: identity operation
pdbx struct oper list.vector1: 0
pdbx struct oper list.vector2: 0
pdbx struct oper list.vector3: 0

2KK5
type: struct
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entry: 2KK5
struct.entry id: 2KK5
struct.pdbx model details: lowest energy, model 1
struct.title: High Fidelity Base Pairing at the 3'-Terminus

http://rdf.wwpdb.org/pdb/2KK5/struct_asym/C
type: struct asym
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity: http://rdf.wwpdb.org/pdb/2KK5/entity/2
struct asym.id: C
struct asym.entity id: 2
struct asym.pdbx blank PDB chainid flag: N
struct asym.pdbx modified: N

http://rdf.wwpdb.org/pdb/2KK5/struct_asym/D
type: struct asym
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity: http://rdf.wwpdb.org/pdb/2KK5/entity/2
struct asym.id: D
struct asym.entity id: 2
struct asym.pdbx blank PDB chainid flag: N
struct asym.pdbx modified: N

http://rdf.wwpdb.org/pdb/2KK5/struct_biol/1
type: struct biol
of datablock: High Fidelity Base Pairing at the 3'-Terminus
struct biol.id: 1

covale1
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: covale
struct conn.id: covale1
struct conn.conn type id: covale
struct conn.pdbx dist value: 1.609
struct conn.pdbx leaving atom flag: both
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 5
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O3'
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 5
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: 2AU
struct conn.ptnr2 auth seq id: 6
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: P
struct conn.ptnr2 label comp id: 2AU
struct conn.ptnr2 label seq id: 6
struct conn.ptnr2 symmetry: 1_555

covale
referenced by struct conn: covale1
referenced by struct conn: covale2
referenced by struct conn: covale3
referenced by struct conn: covale4
type: struct conn type
of datablock: High Fidelity Base Pairing at the 3'-Terminus
struct conn type.id: covale

covale2
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: covale
struct conn.id: covale2
struct conn.conn type id: covale
struct conn.pdbx dist value: 1.455
struct conn.pdbx leaving atom flag: none
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: 2AU
struct conn.ptnr1 auth seq id: 6
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: C2'
struct conn.ptnr1 label comp id: 2AU
struct conn.ptnr1 label seq id: 6
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: AQC
struct conn.ptnr2 auth seq id: 7
struct conn.ptnr2 label asym id: C
struct conn.ptnr2 label atom id: N2'
struct conn.ptnr2 label comp id: AQC
struct conn.ptnr2 symmetry: 1_555

covale3
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: covale
struct conn.id: covale3
struct conn.conn type id: covale
struct conn.pdbx dist value: 1.61
struct conn.pdbx leaving atom flag: both
struct conn.ptnr1 auth asym id: B
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 5
struct conn.ptnr1 label asym id: B
struct conn.ptnr1 label atom id: O3'
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 5
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: 2AU
struct conn.ptnr2 auth seq id: 6
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: P
struct conn.ptnr2 label comp id: 2AU
struct conn.ptnr2 label seq id: 6
struct conn.ptnr2 symmetry: 1_555

covale4
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: covale
struct conn.id: covale4
struct conn.conn type id: covale
struct conn.pdbx dist value: 1.454
struct conn.pdbx leaving atom flag: none
struct conn.ptnr1 auth asym id: B
struct conn.ptnr1 auth comp id: 2AU
struct conn.ptnr1 auth seq id: 6
struct conn.ptnr1 label asym id: B
struct conn.ptnr1 label atom id: C2'
struct conn.ptnr1 label comp id: 2AU
struct conn.ptnr1 label seq id: 6
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: AQC
struct conn.ptnr2 auth seq id: 7
struct conn.ptnr2 label asym id: D
struct conn.ptnr2 label atom id: N2'
struct conn.ptnr2 label comp id: AQC
struct conn.ptnr2 symmetry: 1_555

hydrog1
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog1
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N3
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 5
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: N1
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 5
struct conn.ptnr2 symmetry: 1_555

hydrog
referenced by struct conn: hydrog1
referenced by struct conn: hydrog2
referenced by struct conn: hydrog3
referenced by struct conn: hydrog4
referenced by struct conn: hydrog5
referenced by struct conn: hydrog6
referenced by struct conn: hydrog7
referenced by struct conn: hydrog8
referenced by struct conn: hydrog9
referenced by struct conn: hydrog10
referenced by struct conn: hydrog11
referenced by struct conn: hydrog12
type: struct conn type
of datablock: High Fidelity Base Pairing at the 3'-Terminus
struct conn type.id: hydrog

hydrog2
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog2
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N4
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 5
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: O6
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 5
struct conn.ptnr2 symmetry: 1_555

hydrog3
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog3
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O2
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 5
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: N2
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 5
struct conn.ptnr2 symmetry: 1_555

hydrog4
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog4
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 3
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N1
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 3
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 4
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: N3
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 4
struct conn.ptnr2 symmetry: 1_555

hydrog5
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog5
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 3
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N2
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 3
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 4
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: O2
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 4
struct conn.ptnr2 symmetry: 1_555

hydrog6
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog6
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 3
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O6
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 3
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 4
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: N4
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 4
struct conn.ptnr2 symmetry: 1_555

hydrog7
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog7
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 4
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N3
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 4
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 3
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: N1
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 3
struct conn.ptnr2 symmetry: 1_555

hydrog8
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog8
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 4
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N4
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 4
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 3
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: O6
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 3
struct conn.ptnr2 symmetry: 1_555

hydrog9
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog9
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DC
struct conn.ptnr1 auth seq id: 4
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O2
struct conn.ptnr1 label comp id: DC
struct conn.ptnr1 label seq id: 4
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 3
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: N2
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 3
struct conn.ptnr2 symmetry: 1_555

hydrog10
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog10
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 5
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N1
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 5
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 2
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: N3
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 2
struct conn.ptnr2 symmetry: 1_555

hydrog11
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog11
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 5
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N2
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 5
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 2
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: O2
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 2
struct conn.ptnr2 symmetry: 1_555

hydrog12
type: struct conn
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct conn type: hydrog
struct conn.id: hydrog12
struct conn.conn type id: hydrog
struct conn.details: WATSON-CRICK
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 5
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O6
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 5
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: B
struct conn.ptnr2 auth comp id: DC
struct conn.ptnr2 auth seq id: 2
struct conn.ptnr2 label asym id: B
struct conn.ptnr2 label atom id: N4
struct conn.ptnr2 label comp id: DC
struct conn.ptnr2 label seq id: 2
struct conn.ptnr2 symmetry: 1_555

2KK5
type: struct keywords
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entry: 2KK5
struct keywords.entry id: 2KK5
struct keywords.pdbx keywords: DNA
struct keywords.text: Anthraquinone-linked DNA, DNA

http://rdf.wwpdb.org/pdb/2KK5/struct_ref/1
type: struct ref
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to entity: http://rdf.wwpdb.org/pdb/2KK5/entity/1
struct ref.id: 1
struct ref.db code: 2KK5
struct ref.db name: PDB
struct ref.entity id: 1
struct ref.pdbx align begin: 1
struct ref.pdbx db accession: 2KK5
struct ref.pdbx seq one letter code: ACGCGU
referenced by struct ref seq: http://rdf.wwpdb.org/pdb/2KK5/struct_ref_seq/2
referenced by struct ref seq: http://rdf.wwpdb.org/pdb/2KK5/struct_ref_seq/1

http://rdf.wwpdb.org/pdb/2KK5/struct_ref_seq/1
type: struct ref seq
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct ref: http://rdf.wwpdb.org/pdb/2KK5/struct_ref/1
struct ref seq.align id: 1
struct ref seq.db align beg: 1
struct ref seq.db align end: 6
struct ref seq.pdbx PDB id code: 2KK5
struct ref seq.pdbx auth seq align beg: 1
struct ref seq.pdbx auth seq align end: 6
struct ref seq.pdbx db accession: 2KK5
struct ref seq.pdbx strand id: A
struct ref seq.ref id: 1
struct ref seq.seq align beg: 1
struct ref seq.seq align end: 6

http://rdf.wwpdb.org/pdb/2KK5/struct_ref_seq/2
type: struct ref seq
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct ref: http://rdf.wwpdb.org/pdb/2KK5/struct_ref/1
struct ref seq.align id: 2
struct ref seq.db align beg: 1
struct ref seq.db align end: 6
struct ref seq.pdbx PDB id code: 2KK5
struct ref seq.pdbx auth seq align beg: 1
struct ref seq.pdbx auth seq align end: 6
struct ref seq.pdbx db accession: 2KK5
struct ref seq.pdbx strand id: B
struct ref seq.ref id: 1
struct ref seq.seq align beg: 1
struct ref seq.seq align end: 6

AC1
type: struct site
of datablock: High Fidelity Base Pairing at the 3'-Terminus
struct site.id: AC1
struct site.details: BINDING SITE FOR RESIDUE AQC A 7
struct site.pdbx auth asym id: A
struct site.pdbx auth comp id: AQC
struct site.pdbx auth seq id: 7
struct site.pdbx evidence code: Software
struct site.pdbx num residues: 4
referenced by struct site gen: 4,AC1
referenced by struct site gen: 1,AC1
referenced by struct site gen: 2,AC1
referenced by struct site gen: 3,AC1

AC2
type: struct site
of datablock: High Fidelity Base Pairing at the 3'-Terminus
struct site.id: AC2
struct site.details: BINDING SITE FOR RESIDUE AQC B 7
struct site.pdbx auth asym id: B
struct site.pdbx auth comp id: AQC
struct site.pdbx auth seq id: 7
struct site.pdbx evidence code: Software
struct site.pdbx num residues: 4
referenced by struct site gen: 8,AC2
referenced by struct site gen: 5,AC2
referenced by struct site gen: 6,AC2
referenced by struct site gen: 7,AC2

http://rdf.wwpdb.org/pdb/2KK5/struct_site/1
type: struct site
of datablock: High Fidelity Base Pairing at the 3'-Terminus
struct site.id: 1
referenced by struct site keywords: 1,INTERCALATION, COVALENT

1,AC1
type: struct site gen
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct site: AC1
struct site gen.id: 1
struct site gen.site id: AC1
struct site gen.auth asym id: A
struct site gen.auth comp id: DG
struct site gen.auth seq id: 5
struct site gen.label asym id: A
struct site gen.label comp id: DG
struct site gen.label seq id: 5
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

2,AC1
type: struct site gen
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct site: AC1
struct site gen.id: 2
struct site gen.site id: AC1
struct site gen.auth asym id: A
struct site gen.auth comp id: 2AU
struct site gen.auth seq id: 6
struct site gen.label asym id: A
struct site gen.label comp id: 2AU
struct site gen.label seq id: 6
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

3,AC1
type: struct site gen
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct site: AC1
struct site gen.id: 3
struct site gen.site id: AC1
struct site gen.auth asym id: B
struct site gen.auth comp id: DA
struct site gen.auth seq id: 1
struct site gen.label asym id: B
struct site gen.label comp id: DA
struct site gen.label seq id: 1
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

4,AC1
type: struct site gen
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct site: AC1
struct site gen.id: 4
struct site gen.site id: AC1
struct site gen.auth asym id: B
struct site gen.auth comp id: DC
struct site gen.auth seq id: 2
struct site gen.label asym id: B
struct site gen.label comp id: DC
struct site gen.label seq id: 2
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

5,AC2
type: struct site gen
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct site: AC2
struct site gen.id: 5
struct site gen.site id: AC2
struct site gen.auth asym id: A
struct site gen.auth comp id: DA
struct site gen.auth seq id: 1
struct site gen.label asym id: A
struct site gen.label comp id: DA
struct site gen.label seq id: 1
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

6,AC2
type: struct site gen
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct site: AC2
struct site gen.id: 6
struct site gen.site id: AC2
struct site gen.auth asym id: A
struct site gen.auth comp id: DC
struct site gen.auth seq id: 2
struct site gen.label asym id: A
struct site gen.label comp id: DC
struct site gen.label seq id: 2
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

7,AC2
type: struct site gen
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct site: AC2
struct site gen.id: 7
struct site gen.site id: AC2
struct site gen.auth asym id: B
struct site gen.auth comp id: DG
struct site gen.auth seq id: 5
struct site gen.label asym id: B
struct site gen.label comp id: DG
struct site gen.label seq id: 5
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

8,AC2
type: struct site gen
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct site: AC2
struct site gen.id: 8
struct site gen.site id: AC2
struct site gen.auth asym id: B
struct site gen.auth comp id: 2AU
struct site gen.auth seq id: 6
struct site gen.label asym id: B
struct site gen.label comp id: 2AU
struct site gen.label seq id: 6
struct site gen.pdbx num res: 4
struct site gen.symmetry: 1_555

1,INTERCALATION, COVALENT
type: struct site keywords
of datablock: High Fidelity Base Pairing at the 3'-Terminus
reference to struct site: http://rdf.wwpdb.org/pdb/2KK5/struct_site/1
struct site keywords.site id: 1
struct site keywords.text: INTERCALATION, COVALENT