NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
type: datablock
alternative label: 1RDE
link to mmcif: 1RDE.cif.gz
link to pdbml: 1RDE.xml.gz
link to pdbml noatom: 1RDE-noatom.xml.gz
link to pdbml extatom: 1RDE-extatom.xml.gz
link to doi: doi:10.2210/pdb1RDE/pdb
datablock name: 1RDE-noatom
has atom sites category: atom sitesCategory
has atom type category: atom typeCategory
has audit author category: audit authorCategory
has audit conform category: audit conformCategory
has chem comp category: chem compCategory
has citation category: citationCategory
has citation author category: citation authorCategory
has database 2 category: database 2Category
has database PDB matrix category: database PDB matrixCategory
has diffrn category: diffrnCategory
has diffrn radiation category: diffrn radiationCategory
has diffrn radiation wavelength category: diffrn radiation wavelengthCategory
has entity category: entityCategory
has entity poly category: entity polyCategory
has entity poly seq category: entity poly seqCategory
has entry category: entryCategory
has exptl category: exptlCategory
has exptl crystal category: exptl crystalCategory
has ndb struct conf na category: ndb struct conf naCategory
has ndb struct na base pair category: ndb struct na base pairCategory
has ndb struct na base pair step category: ndb struct na base pair stepCategory
has pdbx audit revision category category: pdbx audit revision categoryCategory
has pdbx audit revision details category: pdbx audit revision detailsCategory
has pdbx audit revision group category: pdbx audit revision groupCategory
has pdbx audit revision history category: pdbx audit revision historyCategory
has pdbx audit revision item category: pdbx audit revision itemCategory
has pdbx database status category: pdbx database statusCategory
has pdbx entity src syn category: pdbx entity src synCategory
has pdbx nmr details category: pdbx nmr detailsCategory
has pdbx nmr ensemble category: pdbx nmr ensembleCategory
has pdbx nmr exptl category: pdbx nmr exptlCategory
has pdbx nmr exptl sample conditions category: pdbx nmr exptl sample conditionsCategory
has pdbx nmr refine category: pdbx nmr refineCategory
has pdbx nmr representative category: pdbx nmr representativeCategory
has pdbx nmr sample details category: pdbx nmr sample detailsCategory
has pdbx nmr software category: pdbx nmr softwareCategory
has pdbx nmr spectrometer category: pdbx nmr spectrometerCategory
has pdbx poly seq scheme category: pdbx poly seq schemeCategory
has pdbx struct assembly category: pdbx struct assemblyCategory
has pdbx struct assembly gen category: pdbx struct assembly genCategory
has pdbx struct oper list category: pdbx struct oper listCategory
has pdbx validate close contact category: pdbx validate close contactCategory
has struct category: structCategory
has struct asym category: struct asymCategory
has struct biol category: struct biolCategory
has struct conn category: struct connCategory
has struct conn type category: struct conn typeCategory
has struct keywords category: struct keywordsCategory
has struct ref category: struct refCategory
has struct ref seq category: struct ref seqCategory

1RDE
type: atom sites
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
atom sites.entry id: 1RDE
atom sites.fract transf matrix11: 1
atom sites.fract transf matrix12: 0
atom sites.fract transf matrix13: 0
atom sites.fract transf matrix21: 0
atom sites.fract transf matrix22: 1
atom sites.fract transf matrix23: 0
atom sites.fract transf matrix31: 0
atom sites.fract transf matrix32: 0
atom sites.fract transf matrix33: 1
atom sites.fract transf vector1: 0
atom sites.fract transf vector2: 0
atom sites.fract transf vector3: 0

1RDE
referenced by atom sites: 1RDE
referenced by database PDB matrix: 1RDE
type: entry
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
entry.id: 1RDE
referenced by exptl: 1RDE,SOLUTION NMR
referenced by struct: 1RDE
referenced by struct keywords: 1RDE
referenced by pdbx database status: 1RDE
referenced by pdbx nmr details: 1RDE
referenced by pdbx nmr ensemble: 1RDE
referenced by pdbx nmr representative: 1RDE
referenced by pdbx nmr refine: 1RDE,1
referenced by ndb struct conf na: 1RDE,quadruple helix
referenced by ndb struct conf na: 1RDE,double helix

http://rdf.wwpdb.org/pdb/1RDE/atom_type/C
type: atom type
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
atom type.symbol: C

http://rdf.wwpdb.org/pdb/1RDE/atom_type/H
type: atom type
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
atom type.symbol: H

http://rdf.wwpdb.org/pdb/1RDE/atom_type/N
type: atom type
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
atom type.symbol: N

http://rdf.wwpdb.org/pdb/1RDE/atom_type/O
type: atom type
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
atom type.symbol: O

http://rdf.wwpdb.org/pdb/1RDE/atom_type/P
type: atom type
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
atom type.symbol: P

http://rdf.wwpdb.org/pdb/1RDE/audit_author/1
type: audit author
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
audit author.pdbx ordinal: 1
audit author.name: Mao, X.

http://rdf.wwpdb.org/pdb/1RDE/audit_author/2
type: audit author
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
audit author.pdbx ordinal: 2
audit author.name: Marky, L.A.

http://rdf.wwpdb.org/pdb/1RDE/audit_author/3
type: audit author
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
audit author.pdbx ordinal: 3
audit author.name: Gmeiner, W.H.

mmcif pdbx.dic,5.355
type: audit conform
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
audit conform.dict name: mmcif_pdbx.dic
audit conform.dict version: 5.355
audit conform.dict location: http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic

DG
type: chem comp
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
chem comp.id: DG
chem comp.formula: C10 H14 N5 O7 P
chem comp.formula weight: 347.221
chem comp.mon nstd flag: y
chem comp.name: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
chem comp.type: DNA linking
link to chem comp: DG
referenced by entity poly seq: 1,DG,15
referenced by entity poly seq: 1,DG,1
referenced by entity poly seq: 1,DG,2
referenced by entity poly seq: 1,DG,5
referenced by entity poly seq: 1,DG,6
referenced by entity poly seq: 1,DG,8
referenced by entity poly seq: 1,DG,10
referenced by entity poly seq: 1,DG,11
referenced by entity poly seq: 1,DG,14

DT
type: chem comp
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
chem comp.id: DT
chem comp.formula: C10 H15 N2 O8 P
chem comp.formula weight: 322.208
chem comp.mon nstd flag: y
chem comp.name: THYMIDINE-5'-MONOPHOSPHATE
chem comp.type: DNA linking
link to chem comp: DT
referenced by entity poly seq: 1,DT,13
referenced by entity poly seq: 1,DT,3
referenced by entity poly seq: 1,DT,4
referenced by entity poly seq: 1,DT,7
referenced by entity poly seq: 1,DT,9
referenced by entity poly seq: 1,DT,12

primary
type: citation
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
citation.id: primary
citation.country: US
citation.journal abbrev: J.Biomol.Struct.Dyn.
citation.journal id ASTM: JBSDD6
citation.journal id CSD: 0646
citation.journal id ISSN: 0739-1102
citation.journal volume: 22
citation.page first: 25
citation.page last: 33
citation.pdbx database id pub med: 15214802
citation.title: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+.
citation.year: 2004
link to pubmed: pubmed:15214802
references: pubmed:15214802
referenced by citation author: primary,Gmeiner, W.H.,3
referenced by citation author: primary,Mao, X.,1
referenced by citation author: primary,Marky, L.A.,2

primary,Mao, X.,1
type: citation author
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to citation: primary
citation author.citation id: primary
citation author.name: Mao, X.
citation author.ordinal: 1

primary,Marky, L.A.,2
type: citation author
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to citation: primary
citation author.citation id: primary
citation author.name: Marky, L.A.
citation author.ordinal: 2

primary,Gmeiner, W.H.,3
type: citation author
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to citation: primary
citation author.citation id: primary
citation author.name: Gmeiner, W.H.
citation author.ordinal: 3

1RDE,PDB
type: database 2
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
database 2.database code: 1RDE
database 2.database id: PDB
database 2.pdbx DOI: 10.2210/pdb1rde/pdb
database 2.pdbx database accession: pdb_00001rde

RCSB020666,RCSB
type: database 2
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
database 2.database code: RCSB020666
database 2.database id: RCSB

D 1000020666,WWPDB
type: database 2
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
database 2.database code: D_1000020666
database 2.database id: WWPDB

1RDE
type: database PDB matrix
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
database PDB matrix.entry id: 1RDE
database PDB matrix.origx11: 1
database PDB matrix.origx12: 0
database PDB matrix.origx13: 0
database PDB matrix.origx21: 0
database PDB matrix.origx22: 1
database PDB matrix.origx23: 0
database PDB matrix.origx31: 0
database PDB matrix.origx32: 0
database PDB matrix.origx33: 1
database PDB matrix.origx vector1: 0
database PDB matrix.origx vector2: 0
database PDB matrix.origx vector3: 0

http://rdf.wwpdb.org/pdb/1RDE/diffrn/1
type: diffrn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to exptl crystal: http://rdf.wwpdb.org/pdb/1RDE/exptl_crystal/1
diffrn.id: 1
diffrn.crystal id: 1
referenced by diffrn radiation: http://rdf.wwpdb.org/pdb/1RDE/diffrn_radiation/1

http://rdf.wwpdb.org/pdb/1RDE/exptl_crystal/1
referenced by diffrn: http://rdf.wwpdb.org/pdb/1RDE/diffrn/1
type: exptl crystal
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
exptl crystal.id: 1

http://rdf.wwpdb.org/pdb/1RDE/diffrn_radiation/1
type: diffrn radiation
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to diffrn: http://rdf.wwpdb.org/pdb/1RDE/diffrn/1
diffrn radiation.diffrn id: 1
diffrn radiation.pdbx diffrn protocol: SINGLE WAVELENGTH
diffrn radiation.pdbx monochromatic or laue m l: M
diffrn radiation.wavelength id: 1

http://rdf.wwpdb.org/pdb/1RDE/diffrn_radiation_wavelength/1
type: diffrn radiation wavelength
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
diffrn radiation wavelength.id: 1
diffrn radiation wavelength.wt: 1

http://rdf.wwpdb.org/pdb/1RDE/entity/1
type: entity
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
entity.id: 1
entity.formula weight: 4743.051
entity.pdbx description: Thrombin-binding DNA aptamer
entity.pdbx number of molecules: 1
entity.src method: syn
entity.type: polymer
referenced by entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
referenced by struct asym: http://rdf.wwpdb.org/pdb/1RDE/struct_asym/A
referenced by struct ref: http://rdf.wwpdb.org/pdb/1RDE/struct_ref/1
referenced by pdbx entity src syn: 1,1

http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
type: entity poly
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entity: http://rdf.wwpdb.org/pdb/1RDE/entity/1
entity poly.entity id: 1
entity poly.nstd linkage: no
entity poly.nstd monomer: no
entity poly.pdbx seq one letter code can: GGTTGGTGTGGTTGG
entity poly.pdbx strand id: A
entity poly.type: polydeoxyribonucleotide
referenced by entity poly seq: 1,DG,15
referenced by entity poly seq: 1,DG,1
referenced by entity poly seq: 1,DG,2
referenced by entity poly seq: 1,DT,3
referenced by entity poly seq: 1,DT,4
referenced by entity poly seq: 1,DG,5
referenced by entity poly seq: 1,DG,6
referenced by entity poly seq: 1,DT,7
referenced by entity poly seq: 1,DG,8
referenced by entity poly seq: 1,DT,9
referenced by entity poly seq: 1,DG,10
referenced by entity poly seq: 1,DG,11
referenced by entity poly seq: 1,DT,12
referenced by entity poly seq: 1,DT,13
referenced by entity poly seq: 1,DG,14

1,DG,1
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 1
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,1

1,DG,2
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 2
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,2

1,DT,3
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DT
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DT
entity poly seq.num: 3
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DT,3

1,DT,4
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DT
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DT
entity poly seq.num: 4
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DT,4

1,DG,5
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 5
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,5

1,DG,6
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 6
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,6

1,DT,7
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DT
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DT
entity poly seq.num: 7
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DT,7

1,DG,8
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 8
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,8

1,DT,9
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DT
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DT
entity poly seq.num: 9
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DT,9

1,DG,10
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 10
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,10

1,DG,11
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 11
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,11

1,DT,12
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DT
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DT
entity poly seq.num: 12
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DT,12

1,DT,13
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DT
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DT
entity poly seq.num: 13
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DT,13

1,DG,14
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 14
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,14

1,DG,15
type: entity poly seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to chem comp: DG
reference to entity poly: http://rdf.wwpdb.org/pdb/1RDE/entity_poly/1
entity poly seq.entity id: 1
entity poly seq.mon id: DG
entity poly seq.num: 15
entity poly seq.hetero: n
referenced by pdbx poly seq scheme: A,1,DG,15

1RDE,SOLUTION NMR
type: exptl
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
exptl.entry id: 1RDE
exptl.method: SOLUTION NMR

1RDE,double helix
type: ndb struct conf na
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
ndb struct conf na.entry id: 1RDE
ndb struct conf na.feature: double helix

1RDE,quadruple helix
type: ndb struct conf na
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
ndb struct conf na.entry id: 1RDE
ndb struct conf na.feature: quadruple helix

A,DG,2,1 555,A,DG,5,1 555,1
type: ndb struct na base pair
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DG
ndb struct na base pair.i label seq id: 2
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: A
ndb struct na base pair.j label comp id: DG
ndb struct na base pair.j label seq id: 5
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -9.737
ndb struct na base pair.hbond type 12: 3
ndb struct na base pair.hbond type 28: 6
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 2
ndb struct na base pair.j auth asym id: A
ndb struct na base pair.j auth seq id: 5
ndb struct na base pair.opening: 91.492
ndb struct na base pair.pair name: A_DG2:DG5_A
ndb struct na base pair.pair number: 1
ndb struct na base pair.propeller: 14.655
ndb struct na base pair.shear: -1.073
ndb struct na base pair.stagger: -0.033
ndb struct na base pair.stretch: -3.652

A,DG,14,1 555,A,DG,11,1 555,1
type: ndb struct na base pair
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DG
ndb struct na base pair.i label seq id: 14
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: A
ndb struct na base pair.j label comp id: DG
ndb struct na base pair.j label seq id: 11
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: 12.036
ndb struct na base pair.hbond type 28: 6
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 14
ndb struct na base pair.j auth asym id: A
ndb struct na base pair.j auth seq id: 11
ndb struct na base pair.opening: -92.642
ndb struct na base pair.pair name: A_DG14:DG11_A
ndb struct na base pair.pair number: 2
ndb struct na base pair.propeller: -11.778
ndb struct na base pair.shear: 1.132
ndb struct na base pair.stagger: -0.144
ndb struct na base pair.stretch: 3.625

A,DG,15,1 555,A,DG,10,1 555,1
type: ndb struct na base pair
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
ndb struct na base pair.i label asym id: A
ndb struct na base pair.i label comp id: DG
ndb struct na base pair.i label seq id: 15
ndb struct na base pair.i symmetry: 1_555
ndb struct na base pair.j label asym id: A
ndb struct na base pair.j label comp id: DG
ndb struct na base pair.j label seq id: 10
ndb struct na base pair.j symmetry: 1_555
ndb struct na base pair.model number: 1
ndb struct na base pair.buckle: -5.15
ndb struct na base pair.hbond type 28: 6
ndb struct na base pair.i auth asym id: A
ndb struct na base pair.i auth seq id: 15
ndb struct na base pair.j auth asym id: A
ndb struct na base pair.j auth seq id: 10
ndb struct na base pair.opening: 86.331
ndb struct na base pair.pair name: A_DG15:DG10_A
ndb struct na base pair.pair number: 3
ndb struct na base pair.propeller: 7.985
ndb struct na base pair.shear: -1.725
ndb struct na base pair.stagger: -0.081
ndb struct na base pair.stretch: -3.484

A,A,DG,DG,2,14,1 555,1 555,A,A,DG,DG,5,11,1 555,1 555,1
type: ndb struct na base pair step
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
ndb struct na base pair step.i label asym id 1: A
ndb struct na base pair step.i label asym id 2: A
ndb struct na base pair step.i label comp id 1: DG
ndb struct na base pair step.i label comp id 2: DG
ndb struct na base pair step.i label seq id 1: 2
ndb struct na base pair step.i label seq id 2: 14
ndb struct na base pair step.i symmetry 1: 1_555
ndb struct na base pair step.i symmetry 2: 1_555
ndb struct na base pair step.j label asym id 1: A
ndb struct na base pair step.j label asym id 2: A
ndb struct na base pair step.j label comp id 1: DG
ndb struct na base pair step.j label comp id 2: DG
ndb struct na base pair step.j label seq id 1: 5
ndb struct na base pair step.j label seq id 2: 11
ndb struct na base pair step.j symmetry 1: 1_555
ndb struct na base pair step.j symmetry 2: 1_555
ndb struct na base pair step.model number: 1
ndb struct na base pair step.helical rise: 0.023
ndb struct na base pair step.helical twist: -179.227
ndb struct na base pair step.i auth asym id 1: A
ndb struct na base pair step.i auth asym id 2: A
ndb struct na base pair step.i auth seq id 1: 2
ndb struct na base pair step.i auth seq id 2: 14
ndb struct na base pair step.inclination: 1.102
ndb struct na base pair step.j auth asym id 1: A
ndb struct na base pair step.j auth asym id 2: A
ndb struct na base pair step.j auth seq id 1: 5
ndb struct na base pair step.j auth seq id 2: 11
ndb struct na base pair step.rise: 0.023
ndb struct na base pair step.roll: -2.203
ndb struct na base pair step.shift: 1.39
ndb struct na base pair step.slide: 3.695
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ndb struct na base pair step.step number: 1
ndb struct na base pair step.tilt: 4.868
ndb struct na base pair step.tip: 2.434
ndb struct na base pair step.twist: -179.226
ndb struct na base pair step.x displacement: -1.848
ndb struct na base pair step.y displacement: 0.695

A,A,DG,DG,14,15,1 555,1 555,A,A,DG,DG,11,10,1 555,1 555,1
type: ndb struct na base pair step
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ndb struct na base pair step.i label comp id 2: DG
ndb struct na base pair step.i label seq id 1: 14
ndb struct na base pair step.i label seq id 2: 15
ndb struct na base pair step.i symmetry 1: 1_555
ndb struct na base pair step.i symmetry 2: 1_555
ndb struct na base pair step.j label asym id 1: A
ndb struct na base pair step.j label asym id 2: A
ndb struct na base pair step.j label comp id 1: DG
ndb struct na base pair step.j label comp id 2: DG
ndb struct na base pair step.j label seq id 1: 11
ndb struct na base pair step.j label seq id 2: 10
ndb struct na base pair step.j symmetry 1: 1_555
ndb struct na base pair step.j symmetry 2: 1_555
ndb struct na base pair step.model number: 1
ndb struct na base pair step.helical rise: -0.522
ndb struct na base pair step.helical twist: 179.305
ndb struct na base pair step.i auth asym id 1: A
ndb struct na base pair step.i auth asym id 2: A
ndb struct na base pair step.i auth seq id 1: 14
ndb struct na base pair step.i auth seq id 2: 15
ndb struct na base pair step.inclination: 75.764
ndb struct na base pair step.j auth asym id 1: A
ndb struct na base pair step.j auth asym id 2: A
ndb struct na base pair step.j auth seq id 1: 11
ndb struct na base pair step.j auth seq id 2: 10
ndb struct na base pair step.rise: 1.578
ndb struct na base pair step.roll: 151.23
ndb struct na base pair step.shift: 4.242
ndb struct na base pair step.slide: 0.562
ndb struct na base pair step.step name: AA_DG14DG15:DG10DG11_AA
ndb struct na base pair step.step number: 2
ndb struct na base pair step.tilt: -96.023
ndb struct na base pair step.tip: 48.106
ndb struct na base pair step.twist: 72.298
ndb struct na base pair step.x displacement: 0.055
ndb struct na base pair step.y displacement: -2.265

Structure model,1,4
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Structure model,2,4
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Structure model,3,4
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1RDE
type: pdbx database status
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
pdbx database status.entry id: 1RDE
pdbx database status.deposit site: RCSB
pdbx database status.pdb format compatible: Y
pdbx database status.process site: RCSB
pdbx database status.recvd initial deposition date: 2003-11-05
pdbx database status.status code: REL
pdbx database status.status code mr: REL

1,1
type: pdbx entity src syn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entity: http://rdf.wwpdb.org/pdb/1RDE/entity/1
pdbx entity src syn.entity id: 1
pdbx entity src syn.pdbx src id: 1
pdbx entity src syn.details: this sequence was seleted from 10^13 DNA
pdbx entity src syn.pdbx alt source flag: sample

1RDE
type: pdbx nmr details
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
pdbx nmr details.entry id: 1RDE
pdbx nmr details.text: This structure was determined using standard 2D homonuclear techniques.

1RDE
type: pdbx nmr ensemble
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
pdbx nmr ensemble.entry id: 1RDE
pdbx nmr ensemble.conformer selection criteria: all calculated structures submitted
pdbx nmr ensemble.conformers calculated total number: 11
pdbx nmr ensemble.conformers submitted total number: 11

1,1,1
type: pdbx nmr exptl
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
pdbx nmr exptl.conditions id: 1
pdbx nmr exptl.experiment id: 1
pdbx nmr exptl.solution id: 1
pdbx nmr exptl.type: 2D NOESY

1,2,1
type: pdbx nmr exptl
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pdbx nmr exptl.conditions id: 1
pdbx nmr exptl.experiment id: 2
pdbx nmr exptl.solution id: 1
pdbx nmr exptl.type: 2D TOCSY

1,3,1
type: pdbx nmr exptl
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pdbx nmr exptl.conditions id: 1
pdbx nmr exptl.experiment id: 3
pdbx nmr exptl.solution id: 1
pdbx nmr exptl.type: E-COSY

1,4,1
type: pdbx nmr exptl
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pdbx nmr exptl.conditions id: 1
pdbx nmr exptl.experiment id: 4
pdbx nmr exptl.solution id: 1
pdbx nmr exptl.type: P31-H1 COSY

1,5,1
type: pdbx nmr exptl
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pdbx nmr exptl.conditions id: 1
pdbx nmr exptl.experiment id: 5
pdbx nmr exptl.solution id: 1
pdbx nmr exptl.type: ROESY

1,6,2
type: pdbx nmr exptl
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pdbx nmr exptl.conditions id: 1
pdbx nmr exptl.experiment id: 6
pdbx nmr exptl.solution id: 2
pdbx nmr exptl.type: 2D NOESY

http://rdf.wwpdb.org/pdb/1RDE/pdbx_nmr_exptl_sample_conditions/1
type: pdbx nmr exptl sample conditions
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pdbx nmr exptl sample conditions.conditions id: 1
pdbx nmr exptl sample conditions.ionic strength: >3mM
pdbx nmr exptl sample conditions.p h: 4.7
pdbx nmr exptl sample conditions.pressure: ambient
pdbx nmr exptl sample conditions.temperature: 288
pdbx nmr exptl sample conditions.temperature units: K

1RDE,1
type: pdbx nmr refine
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reference to entry: 1RDE
pdbx nmr refine.entry id: 1RDE
pdbx nmr refine.software ordinal: 1
pdbx nmr refine.method: torsion angle dynamics

1RDE
type: pdbx nmr representative
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reference to entry: 1RDE
pdbx nmr representative.entry id: 1RDE
pdbx nmr representative.conformer id: 1
pdbx nmr representative.selection criteria: minimized average structure

http://rdf.wwpdb.org/pdb/1RDE/pdbx_nmr_sample_details/1
type: pdbx nmr sample details
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pdbx nmr sample details.solution id: 1
pdbx nmr sample details.contents: 1mM strand, natural abundant, no buffer, 100% D2O
pdbx nmr sample details.solvent system: 100% D2O

http://rdf.wwpdb.org/pdb/1RDE/pdbx_nmr_sample_details/2
type: pdbx nmr sample details
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
pdbx nmr sample details.solution id: 2
pdbx nmr sample details.contents: 1mM strand, natural abundant, no buffer, 90% H2O, 10% D2O
pdbx nmr sample details.solvent system: 90% H2O/10% D2O

http://rdf.wwpdb.org/pdb/1RDE/pdbx_nmr_software/1
type: pdbx nmr software
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pdbx nmr software.ordinal: 1
pdbx nmr software.authors: Brunger, A.T.
pdbx nmr software.classification: collection
pdbx nmr software.name: CNS
pdbx nmr software.version: 1.1

http://rdf.wwpdb.org/pdb/1RDE/pdbx_nmr_software/2
type: pdbx nmr software
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pdbx nmr software.ordinal: 2
pdbx nmr software.authors: Brunger, A.T.
pdbx nmr software.classification: refinement
pdbx nmr software.name: CNS

http://rdf.wwpdb.org/pdb/1RDE/pdbx_nmr_spectrometer/1
type: pdbx nmr spectrometer
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pdbx nmr spectrometer.spectrometer id: 1
pdbx nmr spectrometer.field strength: 600
pdbx nmr spectrometer.manufacturer: Bruker
pdbx nmr spectrometer.model: AVANCE

A,1,DG,1
type: pdbx poly seq scheme
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reference to entity poly seq: 1,DG,1
reference to struct asym: http://rdf.wwpdb.org/pdb/1RDE/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 1
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pdbx poly seq scheme.auth seq num: 1
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 1
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 1
pdbx poly seq scheme.pdb strand id: A

http://rdf.wwpdb.org/pdb/1RDE/struct_asym/A
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referenced by pdbx poly seq scheme: A,1,DT,4
referenced by pdbx poly seq scheme: A,1,DG,5
referenced by pdbx poly seq scheme: A,1,DG,6
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referenced by pdbx poly seq scheme: A,1,DG,8
referenced by pdbx poly seq scheme: A,1,DT,9
referenced by pdbx poly seq scheme: A,1,DG,10
referenced by pdbx poly seq scheme: A,1,DG,11
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referenced by pdbx poly seq scheme: A,1,DG,14
referenced by pdbx poly seq scheme: A,1,DG,15
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reference to entity: http://rdf.wwpdb.org/pdb/1RDE/entity/1
struct asym.id: A
struct asym.entity id: 1
struct asym.pdbx blank PDB chainid flag: N
struct asym.pdbx modified: N

A,1,DG,2
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pdbx poly seq scheme.hetero: n
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pdbx poly seq scheme.pdb strand id: A

A,1,DT,3
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pdbx poly seq scheme.asym id: A
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pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 3
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pdbx poly seq scheme.pdb seq num: 3
pdbx poly seq scheme.pdb strand id: A

A,1,DT,4
type: pdbx poly seq scheme
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reference to entity poly seq: 1,DT,4
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pdbx poly seq scheme.asym id: A
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pdbx poly seq scheme.seq id: 4
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pdbx poly seq scheme.auth seq num: 4
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 4
pdbx poly seq scheme.pdb mon id: DT
pdbx poly seq scheme.pdb seq num: 4
pdbx poly seq scheme.pdb strand id: A

A,1,DG,5
type: pdbx poly seq scheme
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reference to entity poly seq: 1,DG,5
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pdbx poly seq scheme.asym id: A
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pdbx poly seq scheme.mon id: DG
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pdbx poly seq scheme.auth mon id: GUA
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pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 5
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 5
pdbx poly seq scheme.pdb strand id: A

A,1,DG,6
type: pdbx poly seq scheme
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pdbx poly seq scheme.asym id: A
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pdbx poly seq scheme.hetero: n
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pdbx poly seq scheme.pdb seq num: 6
pdbx poly seq scheme.pdb strand id: A

A,1,DT,7
type: pdbx poly seq scheme
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pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
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pdbx poly seq scheme.auth mon id: THY
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pdbx poly seq scheme.hetero: n
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pdbx poly seq scheme.pdb mon id: DT
pdbx poly seq scheme.pdb seq num: 7
pdbx poly seq scheme.pdb strand id: A

A,1,DG,8
type: pdbx poly seq scheme
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reference to entity poly seq: 1,DG,8
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pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
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pdbx poly seq scheme.auth mon id: GUA
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pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 8
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 8
pdbx poly seq scheme.pdb strand id: A

A,1,DT,9
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pdbx poly seq scheme.asym id: A
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pdbx poly seq scheme.ndb seq num: 9
pdbx poly seq scheme.pdb mon id: DT
pdbx poly seq scheme.pdb seq num: 9
pdbx poly seq scheme.pdb strand id: A

A,1,DG,10
type: pdbx poly seq scheme
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pdbx poly seq scheme.asym id: A
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pdbx poly seq scheme.mon id: DG
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pdbx poly seq scheme.auth mon id: GUA
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pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 10
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 10
pdbx poly seq scheme.pdb strand id: A

A,1,DG,11
type: pdbx poly seq scheme
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entity poly seq: 1,DG,11
reference to struct asym: http://rdf.wwpdb.org/pdb/1RDE/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 11
pdbx poly seq scheme.auth mon id: GUA
pdbx poly seq scheme.auth seq num: 11
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 11
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 11
pdbx poly seq scheme.pdb strand id: A

A,1,DT,12
type: pdbx poly seq scheme
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entity poly seq: 1,DT,12
reference to struct asym: http://rdf.wwpdb.org/pdb/1RDE/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DT
pdbx poly seq scheme.seq id: 12
pdbx poly seq scheme.auth mon id: THY
pdbx poly seq scheme.auth seq num: 12
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 12
pdbx poly seq scheme.pdb mon id: DT
pdbx poly seq scheme.pdb seq num: 12
pdbx poly seq scheme.pdb strand id: A

A,1,DT,13
type: pdbx poly seq scheme
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entity poly seq: 1,DT,13
reference to struct asym: http://rdf.wwpdb.org/pdb/1RDE/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DT
pdbx poly seq scheme.seq id: 13
pdbx poly seq scheme.auth mon id: THY
pdbx poly seq scheme.auth seq num: 13
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 13
pdbx poly seq scheme.pdb mon id: DT
pdbx poly seq scheme.pdb seq num: 13
pdbx poly seq scheme.pdb strand id: A

A,1,DG,14
type: pdbx poly seq scheme
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entity poly seq: 1,DG,14
reference to struct asym: http://rdf.wwpdb.org/pdb/1RDE/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 14
pdbx poly seq scheme.auth mon id: GUA
pdbx poly seq scheme.auth seq num: 14
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 14
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 14
pdbx poly seq scheme.pdb strand id: A

A,1,DG,15
type: pdbx poly seq scheme
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entity poly seq: 1,DG,15
reference to struct asym: http://rdf.wwpdb.org/pdb/1RDE/struct_asym/A
pdbx poly seq scheme.asym id: A
pdbx poly seq scheme.entity id: 1
pdbx poly seq scheme.mon id: DG
pdbx poly seq scheme.seq id: 15
pdbx poly seq scheme.auth mon id: GUA
pdbx poly seq scheme.auth seq num: 15
pdbx poly seq scheme.hetero: n
pdbx poly seq scheme.ndb seq num: 15
pdbx poly seq scheme.pdb mon id: DG
pdbx poly seq scheme.pdb seq num: 15
pdbx poly seq scheme.pdb strand id: A

http://rdf.wwpdb.org/pdb/1RDE/pdbx_struct_assembly/1
type: pdbx struct assembly
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
pdbx struct assembly.id: 1
pdbx struct assembly.details: author_defined_assembly
pdbx struct assembly.oligomeric count: 1
pdbx struct assembly.oligomeric details: monomeric
referenced by pdbx struct assembly gen: 1,A,1

1,A,1
type: pdbx struct assembly gen
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to pdbx struct assembly: http://rdf.wwpdb.org/pdb/1RDE/pdbx_struct_assembly/1
pdbx struct assembly gen.assembly id: 1
pdbx struct assembly gen.asym id list: A
pdbx struct assembly gen.oper expression: 1

http://rdf.wwpdb.org/pdb/1RDE/pdbx_struct_oper_list/1
type: pdbx struct oper list
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
pdbx struct oper list.id: 1
pdbx struct oper list.matrix11: 1
pdbx struct oper list.matrix12: 0
pdbx struct oper list.matrix13: 0
pdbx struct oper list.matrix21: 0
pdbx struct oper list.matrix22: 1
pdbx struct oper list.matrix23: 0
pdbx struct oper list.matrix31: 0
pdbx struct oper list.matrix32: 0
pdbx struct oper list.matrix33: 1
pdbx struct oper list.name: 1_555
pdbx struct oper list.symmetry operation: x,y,z
pdbx struct oper list.type: identity operation
pdbx struct oper list.vector1: 0
pdbx struct oper list.vector2: 0
pdbx struct oper list.vector3: 0

http://rdf.wwpdb.org/pdb/1RDE/pdbx_validate_close_contact/1
type: pdbx validate close contact
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
pdbx validate close contact.id: 1
pdbx validate close contact.pdb model num: 10
pdbx validate close contact.auth asym id 1: A
pdbx validate close contact.auth asym id 2: A
pdbx validate close contact.auth atom id 1: H4'
pdbx validate close contact.auth atom id 2: O5'
pdbx validate close contact.auth comp id 1: DT
pdbx validate close contact.auth comp id 2: DG
pdbx validate close contact.auth seq id 1: 9
pdbx validate close contact.auth seq id 2: 10
pdbx validate close contact.dist: 1.51

1RDE
type: struct
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
struct.entry id: 1RDE
struct.pdbx model type details: minimized average
struct.title: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+

http://rdf.wwpdb.org/pdb/1RDE/struct_biol/1
type: struct biol
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
struct biol.id: 1

hydrog1
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog1
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 1
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N1
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 1
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 6
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: O6
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 6
struct conn.ptnr2 symmetry: 1_555

hydrog
referenced by struct conn: hydrog1
referenced by struct conn: hydrog2
referenced by struct conn: hydrog3
referenced by struct conn: hydrog4
referenced by struct conn: hydrog5
referenced by struct conn: hydrog6
referenced by struct conn: hydrog7
referenced by struct conn: hydrog8
referenced by struct conn: hydrog9
referenced by struct conn: hydrog10
referenced by struct conn: hydrog11
referenced by struct conn: hydrog12
referenced by struct conn: hydrog13
referenced by struct conn: hydrog14
referenced by struct conn: hydrog15
referenced by struct conn: hydrog16
type: struct conn type
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
struct conn type.id: hydrog

hydrog2
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog2
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 1
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N2
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 1
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 6
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N7
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 6
struct conn.ptnr2 symmetry: 1_555

hydrog3
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog3
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 1
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N7
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 1
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 15
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N2
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 15
struct conn.ptnr2 symmetry: 1_555

hydrog4
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog4
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 1
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O6
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 1
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 15
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N1
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 15
struct conn.ptnr2 symmetry: 1_555

hydrog5
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog5
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N7
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 5
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N2
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 5
struct conn.ptnr2 symmetry: 1_555

hydrog6
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog6
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O6
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 5
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N1
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 5
struct conn.ptnr2 symmetry: 1_555

hydrog7
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog7
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N1
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 14
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: O6
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 14
struct conn.ptnr2 symmetry: 1_555

hydrog8
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog8
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 2
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N2
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 2
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 14
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N7
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 14
struct conn.ptnr2 symmetry: 1_555

hydrog9
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog9
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 5
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N7
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 5
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 11
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N2
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 11
struct conn.ptnr2 symmetry: 1_555

hydrog10
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog10
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 5
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O6
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 5
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 11
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N1
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 11
struct conn.ptnr2 symmetry: 1_555

hydrog11
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog11
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 6
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N1
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 6
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 10
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: O6
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 10
struct conn.ptnr2 symmetry: 1_555

hydrog12
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog12
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 6
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N2
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 6
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 10
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N7
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 10
struct conn.ptnr2 symmetry: 1_555

hydrog13
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog13
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 10
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N1
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 10
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 15
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: O6
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 15
struct conn.ptnr2 symmetry: 1_555

hydrog14
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog14
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 10
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N2
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 10
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 15
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N7
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 15
struct conn.ptnr2 symmetry: 1_555

hydrog15
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog15
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 11
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: N7
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 11
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 14
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N2
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 14
struct conn.ptnr2 symmetry: 1_555

hydrog16
type: struct conn
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct conn type: hydrog
struct conn.id: hydrog16
struct conn.conn type id: hydrog
struct conn.details: TYPE_6_PAIR
struct conn.ptnr1 auth asym id: A
struct conn.ptnr1 auth comp id: DG
struct conn.ptnr1 auth seq id: 11
struct conn.ptnr1 label asym id: A
struct conn.ptnr1 label atom id: O6
struct conn.ptnr1 label comp id: DG
struct conn.ptnr1 label seq id: 11
struct conn.ptnr1 symmetry: 1_555
struct conn.ptnr2 auth asym id: A
struct conn.ptnr2 auth comp id: DG
struct conn.ptnr2 auth seq id: 14
struct conn.ptnr2 label asym id: A
struct conn.ptnr2 label atom id: N1
struct conn.ptnr2 label comp id: DG
struct conn.ptnr2 label seq id: 14
struct conn.ptnr2 symmetry: 1_555

1RDE
type: struct keywords
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entry: 1RDE
struct keywords.entry id: 1RDE
struct keywords.pdbx keywords: DNA
struct keywords.text: thrombin-binding DNA, Sr2+, quadruplex, DNA

http://rdf.wwpdb.org/pdb/1RDE/struct_ref/1
type: struct ref
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to entity: http://rdf.wwpdb.org/pdb/1RDE/entity/1
struct ref.id: 1
struct ref.db code: 1RDE
struct ref.db name: PDB
struct ref.entity id: 1
struct ref.pdbx db accession: 1RDE
referenced by struct ref seq: http://rdf.wwpdb.org/pdb/1RDE/struct_ref_seq/1

http://rdf.wwpdb.org/pdb/1RDE/struct_ref_seq/1
type: struct ref seq
of datablock: NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+
reference to struct ref: http://rdf.wwpdb.org/pdb/1RDE/struct_ref/1
struct ref seq.align id: 1
struct ref seq.db align beg: 1
struct ref seq.db align end: 15
struct ref seq.pdbx PDB id code: 1RDE
struct ref seq.pdbx auth seq align beg: 1
struct ref seq.pdbx auth seq align end: 15
struct ref seq.pdbx db accession: 1RDE
struct ref seq.pdbx strand id: A
struct ref seq.ref id: 1
struct ref seq.seq align beg: 1
struct ref seq.seq align end: 15